[ARVADOS] updated: 1.1.2-168-g54e5ad1

[Git user]

Summary of changes:
 .../controllers/container_requests_controller.rb   |  11 +
 apps/workbench/app/models/container_work_unit.rb   |  36 +-
 .../container_requests/_show_recent_rows.html.erb  |   2 +-
 .../app/views/projects/_show_dashboard.html.erb    |  15 +-
 .../container_requests_controller_test.rb          |  16 +-
 apps/workbench/test/unit/work_unit_test.rb         |   2 +-
 doc/_includes/_mount_types.liquid                  |   2 +-
 sdk/cwl/arvados_cwl/__init__.py                    |  15 +-
 sdk/cwl/arvados_cwl/arvcontainer.py                |  23 +-
 sdk/cwl/arvados_cwl/arvtool.py                     |   9 +-
 sdk/cwl/arvados_cwl/pathmapper.py                  |  14 +-
 sdk/cwl/arvados_cwl/runner.py                      |   2 +-
 sdk/cwl/setup.py                                   |   2 +-
 sdk/cwl/tests/arvados-tests.sh                     |   3 +
 sdk/cwl/tests/{secondary/dir => hg19}/hg19.fa      |   0
 sdk/cwl/tests/{secondary/dir => hg19}/hg19.fa.amb  |   0
 sdk/cwl/tests/{secondary/dir => hg19}/hg19.fa.ann  |   0
 sdk/cwl/tests/{secondary/dir => hg19}/hg19.fa.fai  |   0
 sdk/cwl/tests/test_make_output.py                  |   2 +
 sdk/go/arvadostest/fixtures.go                     |   1 +
 services/api/app/models/container.rb               |  24 +-
 services/api/app/models/container_request.rb       |  13 +-
 services/api/test/fixtures/container_requests.yml  |   4 +-
 services/api/test/fixtures/users.yml               |  16 +
 services/api/test/unit/container_test.rb           |   4 +-
 .../crunch-dispatch-slurm/crunch-dispatch-slurm.go |  91 ++---
 .../crunch-dispatch-slurm_test.go                  | 195 ++++-------
 services/crunch-dispatch-slurm/slurm.go            |  73 ++++
 services/crunch-dispatch-slurm/squeue.go           |   9 +-
 services/crunch-run/crunchrun.go                   | 370 +++++++++++----------
 services/crunch-run/crunchrun_test.go              | 227 +++++++------
 services/keepstore/azure_blob_volume.go            |  16 +-
 services/keepstore/azure_blob_volume_test.go       |   5 +
 tools/arvbox/lib/arvbox/docker/Dockerfile.base     |   1 +
 tools/arvbox/lib/arvbox/docker/Dockerfile.demo     |   5 +-
 tools/arvbox/lib/arvbox/docker/crunch-setup.sh     |   9 +-
 tools/arvbox/lib/arvbox/docker/go-setup.sh         |  16 +
 tools/arvbox/lib/arvbox/docker/keep-setup.sh       |   9 +-
 .../docker/service/arv-git-httpd/run-service       |   9 +-
 .../lib/arvbox/docker/service/composer/run-service |  12 +-
 .../service/crunch-dispatch-local/run-service      |  15 +-
 .../lib/arvbox/docker/service/keep-web/run-service |   9 +-
 .../arvbox/docker/service/keepproxy/run-service    |   9 +-
 .../arvbox/lib/arvbox/docker/service/postgres/run  |   2 +
 .../arvbox/docker/service/websockets/run-service   |   8 +-
 tools/sync-groups/sync-groups.go                   |  21 +-
 tools/sync-groups/sync-groups_test.go              |  33 +-
 47 files changed, 760 insertions(+), 600 deletions(-)
 copy sdk/cwl/tests/{secondary/dir => hg19}/hg19.fa (100%)
 copy sdk/cwl/tests/{secondary/dir => hg19}/hg19.fa.amb (100%)
 copy sdk/cwl/tests/{secondary/dir => hg19}/hg19.fa.ann (100%)
 copy sdk/cwl/tests/{secondary/dir => hg19}/hg19.fa.fai (100%)
 create mode 100644 services/crunch-dispatch-slurm/slurm.go
 create mode 100644 tools/arvbox/lib/arvbox/docker/go-setup.sh

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Those revisions listed above that are new to this repository have
not appeared on any other notification email; so we list those
revisions in full, below.


commit 54e5ad11af9ee6804c908e49249edf87de7b35dd
Merge: 4d44621 b3e8a48
Author: jiayong2 <jiayong at math.mit.edu>
Date:   Thu Feb 1 21:07:04 2018 +0000

    Merge branch 'master' into 11850-singlecontainer-max-requirements
    
    Arvados-DCO-1.1-Signed-off-by: Jiayong Li <jiayong at math.mit.edu>


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