[ARVADOS] created: 1.3.0-59-gfef817dc5

[Git user]

        at  fef817dc5d6d1e0160c6c14ba4f41581e241f33a (commit)


commit fef817dc5d6d1e0160c6c14ba4f41581e241f33a
Author: Tom Clegg <tclegg at veritasgenetics.com>
Date:   Fri Dec 14 15:59:34 2018 -0500

    11419: Read JSON files in binary mode.
    
    Files opened in text mode do not have a size() method.
    
    Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg at veritasgenetics.com>

diff --git a/sdk/cwl/arvados_cwl/runner.py b/sdk/cwl/arvados_cwl/runner.py
index 1d5f98f20..4b3275fa3 100644
--- a/sdk/cwl/arvados_cwl/runner.py
+++ b/sdk/cwl/arvados_cwl/runner.py
@@ -461,7 +461,7 @@ class Runner(Process):
                                                        keep_client=self.arvrunner.keep_client,
                                                        num_retries=self.arvrunner.num_retries)
             if "cwl.output.json" in outc:
-                with outc.open("cwl.output.json") as f:
+                with outc.open("cwl.output.json", "rb") as f:
                     if f.size() > 0:
                         outputs = json.load(f)
             def keepify(fileobj):

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