[ARVADOS] updated: 1.1.4-77-gf98e018
Git user
git at public.curoverse.com
Fri Apr 20 04:21:03 EDT 2018
Summary of changes:
build/run-tests.sh | 8 +-
doc/Rakefile | 52 +-
doc/_config.yml | 3 +-
doc/sdk/R/index.html.textile.liquid | 15 -
sdk/R/NAMESPACE | 3 +-
sdk/R/R/Arvados.R | 5866 +++++++++++++++++++-
sdk/R/R/Collection.R | 63 +-
sdk/R/R/HttpRequest.R | 75 +-
sdk/R/R/RESTService.R | 137 +-
sdk/R/R/Subcollection.R | 2 +-
sdk/R/R/autoGenAPI.R | 571 ++
sdk/R/R/util.R | 37 +-
sdk/R/README.Rmd | 46 +-
sdk/R/createDoc.R | 20 +
sdk/R/install_deps.R | 11 +-
sdk/R/man/Arvados.Rd | 200 +-
sdk/R/man/api_client_authorizations.create.Rd | 20 +
...api_client_authorizations.create_system_auth.Rd | 20 +
sdk/R/man/api_client_authorizations.current.Rd | 14 +
sdk/R/man/api_client_authorizations.delete.Rd | 17 +
sdk/R/man/api_client_authorizations.get.Rd | 17 +
sdk/R/man/api_client_authorizations.list.Rd | 34 +
sdk/R/man/api_client_authorizations.update.Rd | 20 +
sdk/R/man/api_clients.create.Rd | 20 +
sdk/R/man/api_clients.delete.Rd | 17 +
sdk/R/man/api_clients.get.Rd | 17 +
sdk/R/man/api_clients.list.Rd | 34 +
sdk/R/man/api_clients.update.Rd | 20 +
sdk/R/man/authorized_keys.create.Rd | 20 +
sdk/R/man/authorized_keys.delete.Rd | 17 +
sdk/R/man/authorized_keys.get.Rd | 17 +
sdk/R/man/authorized_keys.list.Rd | 34 +
sdk/R/man/authorized_keys.update.Rd | 20 +
sdk/R/man/collections.create.Rd | 20 +
sdk/R/man/collections.delete.Rd | 17 +
sdk/R/man/collections.get.Rd | 17 +
sdk/R/man/collections.list.Rd | 36 +
sdk/R/man/collections.provenance.Rd | 17 +
sdk/R/man/collections.trash.Rd | 17 +
sdk/R/man/collections.untrash.Rd | 17 +
sdk/R/man/collections.update.Rd | 20 +
sdk/R/man/collections.used_by.Rd | 17 +
sdk/R/man/container_requests.create.Rd | 20 +
sdk/R/man/container_requests.delete.Rd | 17 +
sdk/R/man/container_requests.get.Rd | 17 +
sdk/R/man/container_requests.list.Rd | 34 +
sdk/R/man/container_requests.update.Rd | 20 +
sdk/R/man/containers.auth.Rd | 17 +
sdk/R/man/containers.create.Rd | 20 +
sdk/R/man/containers.current.Rd | 14 +
sdk/R/man/containers.delete.Rd | 17 +
sdk/R/man/containers.get.Rd | 17 +
sdk/R/man/containers.list.Rd | 34 +
sdk/R/man/containers.lock.Rd | 17 +
sdk/R/man/containers.secret_mounts.Rd | 17 +
sdk/R/man/containers.unlock.Rd | 17 +
sdk/R/man/containers.update.Rd | 20 +
sdk/R/man/groups.contents.Rd | 38 +
sdk/R/man/groups.create.Rd | 19 +
sdk/R/man/groups.delete.Rd | 17 +
sdk/R/man/groups.get.Rd | 17 +
sdk/R/man/groups.list.Rd | 36 +
sdk/R/man/groups.trash.Rd | 17 +
sdk/R/man/groups.untrash.Rd | 17 +
sdk/R/man/groups.update.Rd | 19 +
sdk/R/man/humans.create.Rd | 19 +
sdk/R/man/humans.delete.Rd | 17 +
sdk/R/man/humans.get.Rd | 17 +
sdk/R/man/humans.list.Rd | 34 +
sdk/R/man/humans.update.Rd | 19 +
sdk/R/man/job_tasks.create.Rd | 19 +
sdk/R/man/job_tasks.delete.Rd | 17 +
sdk/R/man/job_tasks.get.Rd | 17 +
sdk/R/man/job_tasks.list.Rd | 34 +
sdk/R/man/job_tasks.update.Rd | 19 +
sdk/R/man/jobs.cancel.Rd | 17 +
sdk/R/man/jobs.create.Rd | 29 +
sdk/R/man/jobs.delete.Rd | 17 +
sdk/R/man/jobs.get.Rd | 17 +
sdk/R/man/jobs.list.Rd | 33 +
sdk/R/man/jobs.lock.Rd | 17 +
sdk/R/man/jobs.queue.Rd | 34 +
sdk/R/man/jobs.queue_size.Rd | 14 +
sdk/R/man/jobs.update.Rd | 19 +
sdk/R/man/keep_disks.create.Rd | 20 +
sdk/R/man/keep_disks.delete.Rd | 17 +
sdk/R/man/keep_disks.get.Rd | 17 +
sdk/R/man/keep_disks.list.Rd | 34 +
sdk/R/man/keep_disks.ping.Rd | 31 +
sdk/R/man/keep_disks.update.Rd | 20 +
sdk/R/man/keep_services.accessible.Rd | 14 +
sdk/R/man/keep_services.create.Rd | 20 +
sdk/R/man/keep_services.delete.Rd | 17 +
sdk/R/man/keep_services.get.Rd | 17 +
sdk/R/man/keep_services.list.Rd | 34 +
sdk/R/man/keep_services.update.Rd | 20 +
sdk/R/man/links.create.Rd | 19 +
sdk/R/man/links.delete.Rd | 17 +
sdk/R/man/links.get.Rd | 17 +
sdk/R/man/links.get_permissions.Rd | 17 +
sdk/R/man/links.list.Rd | 34 +
sdk/R/man/links.update.Rd | 19 +
sdk/R/man/listAll.Rd | 22 +
sdk/R/man/logs.create.Rd | 19 +
sdk/R/man/logs.delete.Rd | 17 +
sdk/R/man/logs.get.Rd | 17 +
sdk/R/man/logs.list.Rd | 33 +
sdk/R/man/logs.update.Rd | 19 +
sdk/R/man/nodes.create.Rd | 22 +
sdk/R/man/nodes.delete.Rd | 17 +
sdk/R/man/nodes.get.Rd | 17 +
sdk/R/man/nodes.list.Rd | 34 +
sdk/R/man/nodes.ping.Rd | 19 +
sdk/R/man/nodes.update.Rd | 21 +
sdk/R/man/pipeline_instances.cancel.Rd | 17 +
sdk/R/man/pipeline_instances.create.Rd | 20 +
sdk/R/man/pipeline_instances.delete.Rd | 17 +
sdk/R/man/pipeline_instances.get.Rd | 17 +
sdk/R/man/pipeline_instances.list.Rd | 34 +
sdk/R/man/pipeline_instances.update.Rd | 20 +
sdk/R/man/pipeline_templates.create.Rd | 20 +
sdk/R/man/pipeline_templates.delete.Rd | 17 +
sdk/R/man/pipeline_templates.get.Rd | 17 +
sdk/R/man/pipeline_templates.list.Rd | 34 +
sdk/R/man/pipeline_templates.update.Rd | 20 +
sdk/R/man/print.Arvados.Rd | 16 -
sdk/R/man/projects.create.Rd | 19 +
sdk/R/man/projects.delete.Rd | 17 +
sdk/R/man/projects.get.Rd | 17 +
sdk/R/man/projects.list.Rd | 38 +
sdk/R/man/projects.update.Rd | 19 +
sdk/R/man/repositories.create.Rd | 20 +
sdk/R/man/repositories.delete.Rd | 17 +
sdk/R/man/repositories.get.Rd | 17 +
sdk/R/man/repositories.get_all_permissions.Rd | 14 +
sdk/R/man/repositories.list.Rd | 34 +
sdk/R/man/repositories.update.Rd | 20 +
sdk/R/man/specimens.create.Rd | 20 +
sdk/R/man/specimens.delete.Rd | 17 +
sdk/R/man/specimens.get.Rd | 17 +
sdk/R/man/specimens.list.Rd | 34 +
sdk/R/man/specimens.update.Rd | 20 +
sdk/R/man/traits.create.Rd | 19 +
sdk/R/man/traits.delete.Rd | 17 +
sdk/R/man/traits.get.Rd | 17 +
sdk/R/man/traits.list.Rd | 34 +
sdk/R/man/traits.update.Rd | 19 +
sdk/R/man/user_agreements.create.Rd | 20 +
sdk/R/man/user_agreements.delete.Rd | 17 +
sdk/R/man/user_agreements.get.Rd | 17 +
sdk/R/man/user_agreements.list.Rd | 34 +
sdk/R/man/user_agreements.new.Rd | 14 +
sdk/R/man/user_agreements.sign.Rd | 14 +
sdk/R/man/user_agreements.signatures.Rd | 14 +
sdk/R/man/user_agreements.update.Rd | 20 +
sdk/R/man/users.activate.Rd | 17 +
sdk/R/man/users.create.Rd | 19 +
sdk/R/man/users.current.Rd | 14 +
sdk/R/man/users.delete.Rd | 17 +
sdk/R/man/users.get.Rd | 17 +
sdk/R/man/users.list.Rd | 34 +
sdk/R/man/users.setup.Rd | 26 +
sdk/R/man/users.system.Rd | 14 +
sdk/R/man/users.unsetup.Rd | 17 +
sdk/R/man/users.update.Rd | 19 +
sdk/R/man/users.update_uuid.Rd | 19 +
sdk/R/man/virtual_machines.create.Rd | 20 +
sdk/R/man/virtual_machines.delete.Rd | 17 +
sdk/R/man/virtual_machines.get.Rd | 17 +
sdk/R/man/virtual_machines.get_all_logins.Rd | 14 +
sdk/R/man/virtual_machines.list.Rd | 34 +
sdk/R/man/virtual_machines.logins.Rd | 17 +
sdk/R/man/virtual_machines.update.Rd | 20 +
sdk/R/man/workflows.create.Rd | 20 +
sdk/R/man/workflows.delete.Rd | 17 +
sdk/R/man/workflows.get.Rd | 17 +
sdk/R/man/workflows.list.Rd | 34 +
sdk/R/man/workflows.update.Rd | 20 +
sdk/R/tests/testthat/test-Arvados.R | 306 -
sdk/R/tests/testthat/test-ArvadosFile.R | 2 +-
sdk/R/tests/testthat/test-HttpRequest.R | 19 +-
sdk/R/tests/testthat/test-RESTService.R | 258 -
sdk/R/tests/testthat/test-Subcollection.R | 2 +-
sdk/R/tests/testthat/test-util.R | 24 +
184 files changed, 10023 insertions(+), 1066 deletions(-)
delete mode 100644 doc/sdk/R/index.html.textile.liquid
create mode 100644 sdk/R/R/autoGenAPI.R
create mode 100644 sdk/R/createDoc.R
create mode 100644 sdk/R/man/api_client_authorizations.create.Rd
create mode 100644 sdk/R/man/api_client_authorizations.create_system_auth.Rd
create mode 100644 sdk/R/man/api_client_authorizations.current.Rd
create mode 100644 sdk/R/man/api_client_authorizations.delete.Rd
create mode 100644 sdk/R/man/api_client_authorizations.get.Rd
create mode 100644 sdk/R/man/api_client_authorizations.list.Rd
create mode 100644 sdk/R/man/api_client_authorizations.update.Rd
create mode 100644 sdk/R/man/api_clients.create.Rd
create mode 100644 sdk/R/man/api_clients.delete.Rd
create mode 100644 sdk/R/man/api_clients.get.Rd
create mode 100644 sdk/R/man/api_clients.list.Rd
create mode 100644 sdk/R/man/api_clients.update.Rd
create mode 100644 sdk/R/man/authorized_keys.create.Rd
create mode 100644 sdk/R/man/authorized_keys.delete.Rd
create mode 100644 sdk/R/man/authorized_keys.get.Rd
create mode 100644 sdk/R/man/authorized_keys.list.Rd
create mode 100644 sdk/R/man/authorized_keys.update.Rd
create mode 100644 sdk/R/man/collections.create.Rd
create mode 100644 sdk/R/man/collections.delete.Rd
create mode 100644 sdk/R/man/collections.get.Rd
create mode 100644 sdk/R/man/collections.list.Rd
create mode 100644 sdk/R/man/collections.provenance.Rd
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create mode 100644 sdk/R/man/container_requests.create.Rd
create mode 100644 sdk/R/man/container_requests.delete.Rd
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create mode 100644 sdk/R/man/links.delete.Rd
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create mode 100644 sdk/R/man/links.get_permissions.Rd
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create mode 100644 sdk/R/man/logs.create.Rd
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create mode 100644 sdk/R/man/specimens.create.Rd
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create mode 100644 sdk/R/man/specimens.list.Rd
create mode 100644 sdk/R/man/specimens.update.Rd
create mode 100644 sdk/R/man/traits.create.Rd
create mode 100644 sdk/R/man/traits.delete.Rd
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create mode 100644 sdk/R/man/traits.list.Rd
create mode 100644 sdk/R/man/traits.update.Rd
create mode 100644 sdk/R/man/user_agreements.create.Rd
create mode 100644 sdk/R/man/user_agreements.delete.Rd
create mode 100644 sdk/R/man/user_agreements.get.Rd
create mode 100644 sdk/R/man/user_agreements.list.Rd
create mode 100644 sdk/R/man/user_agreements.new.Rd
create mode 100644 sdk/R/man/user_agreements.sign.Rd
create mode 100644 sdk/R/man/user_agreements.signatures.Rd
create mode 100644 sdk/R/man/user_agreements.update.Rd
create mode 100644 sdk/R/man/users.activate.Rd
create mode 100644 sdk/R/man/users.create.Rd
create mode 100644 sdk/R/man/users.current.Rd
create mode 100644 sdk/R/man/users.delete.Rd
create mode 100644 sdk/R/man/users.get.Rd
create mode 100644 sdk/R/man/users.list.Rd
create mode 100644 sdk/R/man/users.setup.Rd
create mode 100644 sdk/R/man/users.system.Rd
create mode 100644 sdk/R/man/users.unsetup.Rd
create mode 100644 sdk/R/man/users.update.Rd
create mode 100644 sdk/R/man/users.update_uuid.Rd
create mode 100644 sdk/R/man/virtual_machines.create.Rd
create mode 100644 sdk/R/man/virtual_machines.delete.Rd
create mode 100644 sdk/R/man/virtual_machines.get.Rd
create mode 100644 sdk/R/man/virtual_machines.get_all_logins.Rd
create mode 100644 sdk/R/man/virtual_machines.list.Rd
create mode 100644 sdk/R/man/virtual_machines.logins.Rd
create mode 100644 sdk/R/man/virtual_machines.update.Rd
create mode 100644 sdk/R/man/workflows.create.Rd
create mode 100644 sdk/R/man/workflows.delete.Rd
create mode 100644 sdk/R/man/workflows.get.Rd
create mode 100644 sdk/R/man/workflows.list.Rd
create mode 100644 sdk/R/man/workflows.update.Rd
delete mode 100644 sdk/R/tests/testthat/test-Arvados.R
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commit f98e0188777b3e2d229c968824b3e64307dae4e6
Merge: 594f77b 295676c
Author: Fuad Muhic <muhic.fuad at gmail.com>
Date: Fri Apr 20 10:20:12 2018 +0200
Merge branch '13076-r-autogen-api'
refs #13076
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic at capeannenterprises.com>
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