[ARVADOS] updated: 1.1.4-46-g6b7d586
Git user
git at public.curoverse.com
Wed Apr 18 16:27:40 EDT 2018
Summary of changes:
sdk/cwl/arvados_cwl/arvdocker.py | 3 ++-
sdk/cwl/setup.py | 2 +-
2 files changed, 3 insertions(+), 2 deletions(-)
via 6b7d586c08894d1f993445dbdb1cd8f0bbdbe9e5 (commit)
from c387fcfee48b878caa19f09e0b0f07646b2036db (commit)
Those revisions listed above that are new to this repository have
not appeared on any other notification email; so we list those
revisions in full, below.
commit 6b7d586c08894d1f993445dbdb1cd8f0bbdbe9e5
Author: Peter Amstutz <pamstutz at veritasgenetics.com>
Date: Wed Apr 18 16:26:19 2018 -0400
Bump arvados-python-client version dependency.
Set threadsafe api object to use calling command.keepdocker and
command.put.
refs #13108
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz at veritasgenetics.com>
diff --git a/sdk/cwl/arvados_cwl/arvdocker.py b/sdk/cwl/arvados_cwl/arvdocker.py
index 68573aa..7508feb 100644
--- a/sdk/cwl/arvados_cwl/arvdocker.py
+++ b/sdk/cwl/arvados_cwl/arvdocker.py
@@ -57,7 +57,8 @@ def arv_docker_get_image(api_client, dockerRequirement, pull_image, project_uuid
args.append(image_tag)
logger.info("Uploading Docker image %s:%s", image_name, image_tag)
try:
- arvados.commands.keepdocker.main(args, stdout=sys.stderr, install_sig_handlers=False)
+ arvados.commands.put.api_client = api_client
+ arvados.commands.keepdocker.main(args, stdout=sys.stderr, install_sig_handlers=False, api=api_client)
except SystemExit as e:
if e.code:
raise WorkflowException("keepdocker exited with code %s" % e.code)
diff --git a/sdk/cwl/setup.py b/sdk/cwl/setup.py
index 7893aa9..23d0d1c 100644
--- a/sdk/cwl/setup.py
+++ b/sdk/cwl/setup.py
@@ -37,7 +37,7 @@ setup(name='arvados-cwl-runner',
'schema-salad==2.6.20171201034858',
'typing==3.5.3.0',
'ruamel.yaml==0.13.7',
- 'arvados-python-client>=0.1.20170526013812',
+ 'arvados-python-client>=1.1.4.20180418202329',
'setuptools',
'ciso8601 >=1.0.0, <=1.0.4',
],
-----------------------------------------------------------------------
hooks/post-receive
--
More information about the arvados-commits
mailing list