[ARVADOS] updated: 1.1.0-162-g952425f
Git user
git at public.curoverse.com
Thu Oct 19 21:52:46 EDT 2017
Summary of changes:
build/libcloud-pin.sh | 2 +-
build/run-build-packages.sh | 2 +
build/run-library.sh | 2 +-
build/run-tests.sh | 2 +
sdk/cwl/arvados_cwl/fsaccess.py | 12 +-
sdk/cwl/setup.py | 4 +-
sdk/cwl/test_with_arvbox.sh | 2 +-
sdk/cwl/tests/12418-glob-empty-collection.cwl | 20 ++
sdk/cwl/tests/arvados-tests.yml | 6 +
sdk/go/arvados/config.go | 105 ++++++++++
sdk/go/auth/auth.go | 2 +-
sdk/go/dispatch/dispatch.go | 99 ++++++---
sdk/go/health/aggregator.go | 223 +++++++++++++++++++++
sdk/go/health/aggregator_test.go | 202 +++++++++++++++++++
sdk/go/keepclient/block_cache.go | 24 ++-
sdk/go/keepclient/collectionreader_test.go | 1 +
sdk/go/keepclient/keepclient.go | 8 +
sdk/go/keepclient/keepclient_test.go | 4 +-
sdk/python/setup.py | 4 +-
sdk/python/tests/test_collections.py | 4 +
services/api/config/application.rb | 3 +
services/api/lib/safer_file_store.rb | 16 ++
services/arv-git-httpd/auth_handler.go | 2 +-
services/arv-git-httpd/server_test.go | 2 +-
services/crunch-run/crunchrun.go | 38 +++-
services/crunch-run/crunchrun_test.go | 9 +
services/dockercleaner/setup.py | 2 +-
services/fuse/setup.py | 2 +-
services/health/main.go | 55 +++++
services/keepstore/handlers.go | 2 +-
services/keepstore/s3_volume.go | 28 +--
.../arvnodeman/computenode/dispatch/__init__.py | 10 +-
.../arvnodeman/computenode/driver/azure.py | 2 +-
services/nodemanager/setup.py | 6 +-
.../nodemanager/tests/test_computenode_dispatch.py | 2 +-
.../tests/test_computenode_driver_azure.py | 2 +-
tools/arvbox/lib/arvbox/docker/Dockerfile.base | 5 +-
tools/arvbox/lib/arvbox/docker/Dockerfile.demo | 4 +
tools/arvbox/lib/arvbox/docker/Dockerfile.dev | 4 +
tools/arvbox/lib/arvbox/docker/api-setup.sh | 9 +-
tools/arvbox/lib/arvbox/docker/crunch-setup.sh | 12 +-
tools/arvbox/lib/arvbox/docker/daemon.json | 3 +
.../lib/arvbox/docker/service/api/run-service | 7 +-
.../service/crunch-dispatch-local/run-service | 2 +-
.../lib/arvbox/docker/service/gitolite/run-service | 11 +-
.../lib/arvbox/docker/service/sso/run-service | 8 +-
.../arvbox/docker/service/websockets/run-service | 8 +-
.../arvbox/docker/service/workbench/run-service | 9 +-
48 files changed, 891 insertions(+), 100 deletions(-)
create mode 100644 sdk/cwl/tests/12418-glob-empty-collection.cwl
create mode 100644 sdk/go/arvados/config.go
create mode 100644 sdk/go/health/aggregator.go
create mode 100644 sdk/go/health/aggregator_test.go
create mode 100644 services/api/lib/safer_file_store.rb
create mode 100644 services/health/main.go
create mode 100644 tools/arvbox/lib/arvbox/docker/daemon.json
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commit 952425f154e956300ce5f17ac487198e210674a9
Author: Fernando Monserrat <fernando.monserrat at gmail.com>
Date: Thu Oct 19 22:52:34 2017 -0300
12389: do merge master into branch and upgrade version
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat at veritasgenetics.com>
diff --git a/build/run-library.sh b/build/run-library.sh
index 7970f96..6431a97 100755
--- a/build/run-library.sh
+++ b/build/run-library.sh
@@ -47,7 +47,7 @@ version_from_latest_tag() {
vnum1=${version_bits[0]}
vnum2=${version_bits[1]}
vnum3=${version_bits[2]}
- vnum3=$((vnum3+1))
+ vnum3=$((vnum3+2))
#vnum4=$(curl --silent https://ci.curoverse.com/job/new-versioning-build-packages-centos7/lastBuild/buildNumber)
#create new tag
new_version_tag="$vnum1.$vnum2.$vnum3"
diff --git a/sdk/cwl/setup.py b/sdk/cwl/setup.py
index db407e5..f320447 100644
--- a/sdk/cwl/setup.py
+++ b/sdk/cwl/setup.py
@@ -33,7 +33,7 @@ except Exception as e:
raise
setup(name='arvados-cwl-runner',
- version="1.1.1",
+ version="1.1.2",
description='Arvados Common Workflow Language runner',
long_description=open(README).read(),
author='Arvados',
diff --git a/sdk/python/setup.py b/sdk/python/setup.py
index 262e291..2839f78 100644
--- a/sdk/python/setup.py
+++ b/sdk/python/setup.py
@@ -24,7 +24,7 @@ if '--short-tests-only' in sys.argv:
sys.argv.remove('--short-tests-only')
setup(name='arvados-python-client',
- version="1.1.1",
+ version="1.1.2",
description='Arvados client library',
long_description=open(README).read(),
author='Arvados',
diff --git a/services/dockercleaner/setup.py b/services/dockercleaner/setup.py
index 8c9a9a5..69dde01 100644
--- a/services/dockercleaner/setup.py
+++ b/services/dockercleaner/setup.py
@@ -16,7 +16,7 @@ except ImportError:
tagger = egg_info_cmd.egg_info
setup(name="arvados-docker-cleaner",
- version="1.1.1",
+ version="1.1.2",
description="Arvados Docker cleaner",
author="Arvados",
author_email="info at arvados.org",
diff --git a/services/fuse/setup.py b/services/fuse/setup.py
index 55d44bb..a7eb15d 100644
--- a/services/fuse/setup.py
+++ b/services/fuse/setup.py
@@ -24,7 +24,7 @@ if '--short-tests-only' in sys.argv:
sys.argv.remove('--short-tests-only')
setup(name='arvados_fuse',
- version="1.1.1",
+ version="1.1.2",
description='Arvados FUSE driver',
long_description=open(README).read(),
author='Arvados',
diff --git a/services/nodemanager/setup.py b/services/nodemanager/setup.py
index e19bb53..a516233 100644
--- a/services/nodemanager/setup.py
+++ b/services/nodemanager/setup.py
@@ -19,7 +19,7 @@ except ImportError:
tagger = egg_info_cmd.egg_info
setup(name='arvados-node-manager',
- version="1.1.1",
+ version="1.1.2",
description='Arvados compute node manager',
long_description=open(README).read(),
author='Arvados',
commit 981f30da764f35b0b278662d0a5d00b324854e74
Merge: b1536a7 b25f2bd
Author: Fernando Monserrat <fernando.monserrat at gmail.com>
Date: Thu Oct 19 22:47:28 2017 -0300
Merge branch 'master' into 12389-git-from-tag
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat at veritasgenetics.com>
diff --cc sdk/cwl/setup.py
index 32a0389,9e23795..db407e5
--- a/sdk/cwl/setup.py
+++ b/sdk/cwl/setup.py
@@@ -54,9 -55,9 +54,9 @@@ setup(name='arvados-cwl-runner'
'schema-salad==2.6.20170927145003',
'typing==3.5.3.0',
'ruamel.yaml==0.13.7',
- 'arvados-python-client>=0.1.20170526013812',
+ 'arvados-python-client>=1.1.0',
'setuptools',
- 'ciso8601',
+ 'ciso8601 >=1.0.0, <=1.0.4',
],
data_files=[
('share/doc/arvados-cwl-runner', ['LICENSE-2.0.txt', 'README.rst']),
diff --cc services/nodemanager/setup.py
index 46e0d19,f3764fc..e19bb53
--- a/services/nodemanager/setup.py
+++ b/services/nodemanager/setup.py
@@@ -47,7 -47,8 +47,7 @@@ setup(name='arvados-node-manager'
'requests',
'pbr<1.7.0',
'mock>=1.0',
- 'apache-libcloud==2.2.1.dev2',
+ 'apache-libcloud==2.2.2.dev2',
],
zip_safe=False,
- cmdclass={'egg_info': tagger},
)
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