[ARVADOS] updated: 1.1.0-37-g5bc52db

[Git user]

Summary of changes:
 build/libcloud-pin.sh                              |   2 +-
 sdk/cwl/arvados_cwl/fsaccess.py                    |  12 +++----
 sdk/cwl/arvados_cwl/pathmapper.py                  |  26 +++++++++------
 sdk/cwl/setup.py                                   |   2 +-
 sdk/cwl/test_with_arvbox.sh                        |   2 +-
 sdk/cwl/tests/12213-keepref-expr.cwl               |  31 +++++++++++++++++
 sdk/cwl/tests/12213-keepref-job.yml                |   3 ++
 sdk/cwl/tests/12213-keepref-tool.cwl               |  13 ++++++++
 sdk/cwl/tests/12213-keepref-wf.cwl                 |  22 ++++++++++++
 sdk/cwl/tests/12418-glob-empty-collection.cwl      |  20 +++++++++++
 sdk/cwl/tests/arvados-tests.sh                     |   2 +-
 sdk/cwl/tests/arvados-tests.yml                    |  26 +++++++++++++++
 sdk/cwl/tests/runner.sh                            |   6 ----
 sdk/cwl/tests/samples/sample1_S01_R1_001.fastq.gz  | Bin 0 -> 36 bytes
 sdk/cwl/tests/samples/sample1_S01_R3_001.fastq.gz  | Bin 0 -> 36 bytes
 sdk/cwl/tests/samples/sample2_S01_R1_001.fastq.gz  | Bin 0 -> 36 bytes
 sdk/cwl/tests/samples/sample2_S01_R3_001.fastq.gz  | Bin 0 -> 36 bytes
 sdk/go/keepclient/block_cache.go                   |  24 +++++++------
 sdk/go/keepclient/collectionreader_test.go         |   1 +
 sdk/go/keepclient/keepclient.go                    |   8 +++++
 sdk/go/keepclient/keepclient_test.go               |   4 ++-
 sdk/python/arvados/commands/keepdocker.py          |  18 ++++++++--
 sdk/python/setup.py                                |   2 +-
 sdk/python/tests/test_arv_keepdocker.py            |  37 ++++++++++++++++++++-
 sdk/python/tests/test_collections.py               |   4 +++
 services/crunch-run/crunchrun.go                   |  28 ++++++++++++++--
 services/crunch-run/crunchrun_test.go              |   9 +++++
 services/keepstore/handlers.go                     |   2 +-
 services/keepstore/s3_volume.go                    |  28 +++++++++-------
 .../arvnodeman/computenode/driver/azure.py         |   2 +-
 services/nodemanager/setup.py                      |   4 +--
 .../tests/test_computenode_driver_azure.py         |   2 +-
 tools/arvbox/lib/arvbox/docker/Dockerfile.base     |   5 ++-
 tools/arvbox/lib/arvbox/docker/Dockerfile.demo     |   4 +++
 tools/arvbox/lib/arvbox/docker/Dockerfile.dev      |   4 +++
 tools/arvbox/lib/arvbox/docker/api-setup.sh        |   9 +++--
 tools/arvbox/lib/arvbox/docker/crunch-setup.sh     |  12 +++++--
 tools/arvbox/lib/arvbox/docker/daemon.json         |   3 ++
 .../lib/arvbox/docker/service/api/run-service      |   7 +++-
 .../service/crunch-dispatch-local/run-service      |   2 +-
 .../lib/arvbox/docker/service/gitolite/run-service |  11 ++++--
 .../lib/arvbox/docker/service/sso/run-service      |   8 +++--
 .../arvbox/docker/service/websockets/run-service   |   8 ++++-
 .../arvbox/docker/service/workbench/run-service    |   9 +++--
 44 files changed, 344 insertions(+), 78 deletions(-)
 create mode 100644 sdk/cwl/tests/12213-keepref-expr.cwl
 create mode 100644 sdk/cwl/tests/12213-keepref-job.yml
 create mode 100644 sdk/cwl/tests/12213-keepref-tool.cwl
 create mode 100644 sdk/cwl/tests/12213-keepref-wf.cwl
 create mode 100644 sdk/cwl/tests/12418-glob-empty-collection.cwl
 delete mode 100755 sdk/cwl/tests/runner.sh
 create mode 100644 sdk/cwl/tests/samples/sample1_S01_R1_001.fastq.gz
 create mode 100644 sdk/cwl/tests/samples/sample1_S01_R3_001.fastq.gz
 create mode 100644 sdk/cwl/tests/samples/sample2_S01_R1_001.fastq.gz
 create mode 100644 sdk/cwl/tests/samples/sample2_S01_R3_001.fastq.gz
 create mode 100644 tools/arvbox/lib/arvbox/docker/daemon.json

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commit 5bc52dbe43040297c622900797c55e686b377e9b
Merge: ff100fb 15b5b59
Author: Tom Clegg <tclegg at veritasgenetics.com>
Date:   Tue Oct 17 09:06:50 2017 -0400

    12260: Merge branch 'master' into 12260-system-health
    
    Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg at veritasgenetics.com>


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