[ARVADOS] updated: 1.1.1-59-g3a2bac3
Git user
git at public.curoverse.com
Thu Nov 30 16:54:48 EST 2017
Summary of changes:
.../crunch-dispatch-slurm/crunch-dispatch-slurm.go | 2 +-
.../crunch-dispatch-slurm_test.go | 232 ++++++++++++---------
2 files changed, 137 insertions(+), 97 deletions(-)
via 3a2bac3f64cd19c11bcfa9b957b7b473ddfb7a55 (commit)
from e9ce829350cf4beddc52f0a2c0312151b47b9026 (commit)
Those revisions listed above that are new to this repository have
not appeared on any other notification email; so we list those
revisions in full, below.
commit 3a2bac3f64cd19c11bcfa9b957b7b473ddfb7a55
Author: Peter Amstutz <pamstutz at veritasgenetics.com>
Date: Thu Nov 30 16:54:27 2017 -0500
12573: Add test for dynamic priority adjustment.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz at veritasgenetics.com>
diff --git a/services/crunch-dispatch-slurm/crunch-dispatch-slurm.go b/services/crunch-dispatch-slurm/crunch-dispatch-slurm.go
index f379099..2f30ebf 100644
--- a/services/crunch-dispatch-slurm/crunch-dispatch-slurm.go
+++ b/services/crunch-dispatch-slurm/crunch-dispatch-slurm.go
@@ -294,7 +294,7 @@ func run(disp *dispatch.Dispatcher, ctr arvados.Container, status <-chan arvados
} else if updated.Priority == 0 {
log.Printf("Container %s has state %q, priority %d: cancel slurm job", ctr.UUID, updated.State, updated.Priority)
scancel(ctr)
- } else if niceness(updated.Priority) != sqCheck.GetNiceness(ctr.UUID) {
+ } else if niceness(updated.Priority) != sqCheck.GetNiceness(ctr.UUID) && sqCheck.GetNiceness(ctr.UUID) != -1 {
// dynamically adjust priority
scontrolUpdate(updated)
}
diff --git a/services/crunch-dispatch-slurm/crunch-dispatch-slurm_test.go b/services/crunch-dispatch-slurm/crunch-dispatch-slurm_test.go
index 58af4a3..052cdfb 100644
--- a/services/crunch-dispatch-slurm/crunch-dispatch-slurm_test.go
+++ b/services/crunch-dispatch-slurm/crunch-dispatch-slurm_test.go
@@ -64,6 +64,101 @@ func (s *MockArvadosServerSuite) TearDownTest(c *C) {
arvadostest.ResetEnv()
}
+func (s *TestSuite) integrationTest(c *C,
+ newSqueueCmd func() *exec.Cmd,
+ newScancelCmd func(arvados.Container) *exec.Cmd,
+ newSbatchCmd func(arvados.Container) *exec.Cmd,
+ newScontrolCmd func(arvados.Container) *exec.Cmd,
+ sbatchCmdComps []string,
+ runContainer func(*dispatch.Dispatcher, arvados.Container)) arvados.Container {
+ arvadostest.ResetEnv()
+
+ arv, err := arvadosclient.MakeArvadosClient()
+ c.Assert(err, IsNil)
+
+ var sbatchCmdLine []string
+
+ // Override sbatchCmd
+ defer func(orig func(arvados.Container) *exec.Cmd) {
+ sbatchCmd = orig
+ }(sbatchCmd)
+
+ if newSbatchCmd != nil {
+ sbatchCmd = newSbatchCmd
+ } else {
+ sbatchCmd = func(container arvados.Container) *exec.Cmd {
+ sbatchCmdLine = sbatchFunc(container).Args
+ return exec.Command("sh")
+ }
+ }
+
+ // Override squeueCmd
+ defer func(orig func() *exec.Cmd) {
+ squeueCmd = orig
+ }(squeueCmd)
+ squeueCmd = newSqueueCmd
+
+ // Override scancel
+ defer func(orig func(arvados.Container) *exec.Cmd) {
+ scancelCmd = orig
+ }(scancelCmd)
+ scancelCmd = newScancelCmd
+
+ // Override scontrol
+ defer func(orig func(arvados.Container) *exec.Cmd) {
+ scontrolCmd = orig
+ }(scontrolCmd)
+ scontrolCmd = newScontrolCmd
+
+ // There should be one queued container
+ params := arvadosclient.Dict{
+ "filters": [][]string{{"state", "=", "Queued"}},
+ }
+ var containers arvados.ContainerList
+ err = arv.List("containers", params, &containers)
+ c.Check(err, IsNil)
+ c.Check(len(containers.Items), Equals, 1)
+
+ theConfig.CrunchRunCommand = []string{"echo"}
+
+ ctx, cancel := context.WithCancel(context.Background())
+ doneRun := make(chan struct{})
+
+ dispatcher := dispatch.Dispatcher{
+ Arv: arv,
+ PollPeriod: time.Duration(1) * time.Second,
+ RunContainer: func(disp *dispatch.Dispatcher, ctr arvados.Container, status <-chan arvados.Container) {
+ go func() {
+ runContainer(disp, ctr)
+ doneRun <- struct{}{}
+ }()
+ run(disp, ctr, status)
+ cancel()
+ },
+ }
+
+ sqCheck = &SqueueChecker{Period: 500 * time.Millisecond}
+
+ err = dispatcher.Run(ctx)
+ <-doneRun
+ c.Assert(err, Equals, context.Canceled)
+
+ sqCheck.Stop()
+
+ c.Check(sbatchCmdLine, DeepEquals, sbatchCmdComps)
+
+ // There should be no queued containers now
+ err = arv.List("containers", params, &containers)
+ c.Check(err, IsNil)
+ c.Check(len(containers.Items), Equals, 0)
+
+ // Previously "Queued" container should now be in "Complete" state
+ var container arvados.Container
+ err = arv.Get("containers", "zzzzz-dz642-queuedcontainer", nil, &container)
+ c.Check(err, IsNil)
+ return container
+}
+
func (s *TestSuite) TestIntegrationNormal(c *C) {
done := false
container := s.integrationTest(c,
@@ -76,6 +171,7 @@ func (s *TestSuite) TestIntegrationNormal(c *C) {
},
nil,
nil,
+ nil,
[]string(nil),
func(dispatcher *dispatch.Dispatcher, container arvados.Container) {
dispatcher.UpdateState(container.UUID, dispatch.Running)
@@ -109,6 +205,7 @@ func (s *TestSuite) TestIntegrationCancel(c *C) {
}
},
nil,
+ nil,
[]string(nil),
func(dispatcher *dispatch.Dispatcher, container arvados.Container) {
dispatcher.UpdateState(container.UUID, dispatch.Running)
@@ -127,6 +224,7 @@ func (s *TestSuite) TestIntegrationMissingFromSqueue(c *C) {
func() *exec.Cmd { return exec.Command("echo") },
nil,
nil,
+ nil,
[]string{"sbatch",
fmt.Sprintf("--job-name=%s", "zzzzz-dz642-queuedcontainer"),
fmt.Sprintf("--mem=%d", 11445),
@@ -148,6 +246,7 @@ func (s *TestSuite) TestSbatchFail(c *C) {
func(container arvados.Container) *exec.Cmd {
return exec.Command("false")
},
+ nil,
[]string(nil),
func(dispatcher *dispatch.Dispatcher, container arvados.Container) {
dispatcher.UpdateState(container.UUID, dispatch.Running)
@@ -166,102 +265,6 @@ func (s *TestSuite) TestSbatchFail(c *C) {
c.Assert(len(ll.Items), Equals, 1)
}
-func (s *TestSuite) integrationTest(c *C,
- newSqueueCmd func() *exec.Cmd,
- newScancelCmd func(arvados.Container) *exec.Cmd,
- newSbatchCmd func(arvados.Container) *exec.Cmd,
- sbatchCmdComps []string,
- runContainer func(*dispatch.Dispatcher, arvados.Container)) arvados.Container {
- arvadostest.ResetEnv()
-
- arv, err := arvadosclient.MakeArvadosClient()
- c.Assert(err, IsNil)
-
- var sbatchCmdLine []string
-
- // Override sbatchCmd
- defer func(orig func(arvados.Container) *exec.Cmd) {
- sbatchCmd = orig
- }(sbatchCmd)
-
- if newSbatchCmd != nil {
- sbatchCmd = newSbatchCmd
- } else {
- sbatchCmd = func(container arvados.Container) *exec.Cmd {
- sbatchCmdLine = sbatchFunc(container).Args
- return exec.Command("sh")
- }
- }
-
- // Override squeueCmd
- defer func(orig func() *exec.Cmd) {
- squeueCmd = orig
- }(squeueCmd)
- squeueCmd = newSqueueCmd
-
- // Override scancel
- defer func(orig func(arvados.Container) *exec.Cmd) {
- scancelCmd = orig
- }(scancelCmd)
- scancelCmd = newScancelCmd
-
- // Override scontrol
- defer func(orig func(arvados.Container) *exec.Cmd) {
- scontrolCmd = orig
- }(scontrolCmd)
- scontrolCmd = func(container arvados.Container) *exec.Cmd {
- return exec.Command("true")
- }
-
- // There should be one queued container
- params := arvadosclient.Dict{
- "filters": [][]string{{"state", "=", "Queued"}},
- }
- var containers arvados.ContainerList
- err = arv.List("containers", params, &containers)
- c.Check(err, IsNil)
- c.Check(len(containers.Items), Equals, 1)
-
- theConfig.CrunchRunCommand = []string{"echo"}
-
- ctx, cancel := context.WithCancel(context.Background())
- doneRun := make(chan struct{})
-
- dispatcher := dispatch.Dispatcher{
- Arv: arv,
- PollPeriod: time.Duration(1) * time.Second,
- RunContainer: func(disp *dispatch.Dispatcher, ctr arvados.Container, status <-chan arvados.Container) {
- go func() {
- runContainer(disp, ctr)
- doneRun <- struct{}{}
- }()
- run(disp, ctr, status)
- cancel()
- },
- }
-
- sqCheck = &SqueueChecker{Period: 500 * time.Millisecond}
-
- err = dispatcher.Run(ctx)
- <-doneRun
- c.Assert(err, Equals, context.Canceled)
-
- sqCheck.Stop()
-
- c.Check(sbatchCmdLine, DeepEquals, sbatchCmdComps)
-
- // There should be no queued containers now
- err = arv.List("containers", params, &containers)
- c.Check(err, IsNil)
- c.Check(len(containers.Items), Equals, 0)
-
- // Previously "Queued" container should now be in "Complete" state
- var container arvados.Container
- err = arv.Get("containers", "zzzzz-dz642-queuedcontainer", nil, &container)
- c.Check(err, IsNil)
- return container
-}
-
func (s *MockArvadosServerSuite) TestAPIErrorGettingContainers(c *C) {
apiStubResponses := make(map[string]arvadostest.StubResponse)
apiStubResponses["/arvados/v1/api_client_authorizations/current"] = arvadostest.StubResponse{200, `{"uuid":"` + arvadostest.Dispatch1AuthUUID + `"}`}
@@ -415,3 +418,40 @@ func (s *MockArvadosServerSuite) TestSbatchPartition(c *C) {
c.Check(sbatchCmd.Args, DeepEquals, expected)
}
+
+func (s *TestSuite) TestIntegrationChangePriority(c *C) {
+ var scontrolCmdLine []string
+ step := 0
+
+ container := s.integrationTest(c,
+ func() *exec.Cmd {
+ if step == 0 {
+ return exec.Command("echo", "zzzzz-dz642-queuedcontainer 999000")
+ } else if step == 1 {
+ return exec.Command("echo", "zzzzz-dz642-queuedcontainer 400000")
+ } else {
+ return exec.Command("echo")
+ }
+ },
+ func(arvados.Container) *exec.Cmd { return exec.Command("true") },
+ nil,
+ func(container arvados.Container) *exec.Cmd {
+ scontrolCmdLine = scontrolFunc(container).Args
+ step = 1
+ return exec.Command("true")
+ },
+ []string(nil),
+ func(dispatcher *dispatch.Dispatcher, container arvados.Container) {
+ dispatcher.UpdateState(container.UUID, dispatch.Running)
+ time.Sleep(1 * time.Second)
+ dispatcher.Arv.Update("containers", container.UUID,
+ arvadosclient.Dict{
+ "container": arvadosclient.Dict{"priority": 600}},
+ nil)
+ time.Sleep(1 * time.Second)
+ step = 2
+ dispatcher.UpdateState(container.UUID, dispatch.Complete)
+ })
+ c.Check(container.State, Equals, arvados.ContainerStateComplete)
+ c.Check(scontrolCmdLine, DeepEquals, []string{"scontrol", "update", "JobName=zzzzz-dz642-queuedcontainer", "--nice=400000"})
+}
-----------------------------------------------------------------------
hooks/post-receive
--
More information about the arvados-commits
mailing list