[ARVADOS] updated: 1.1.1-106-gc7399ec
Git user
git at public.curoverse.com
Thu Nov 30 15:06:13 EST 2017
Summary of changes:
.../components/{collections.js => search.js} | 88 +++--
.../app/assets/javascripts/components/sessions.js | 4 +-
.../app/assets/javascripts/models/session_db.js | 30 ++
.../app/controllers/collections_controller.rb | 2 +-
.../workbench/app/controllers/search_controller.rb | 2 +
apps/workbench/app/models/arvados_api_client.rb | 4 +-
apps/workbench/app/models/user.rb | 2 +-
apps/workbench/app/views/layouts/body.html.erb | 2 +-
.../app/views/projects/_show_dashboard.html.erb | 37 +-
.../multisite.html => search/index.html} | 2 +-
apps/workbench/config/routes.rb | 8 +-
.../test/controllers/projects_controller_test.rb | 4 +-
.../test/integration/application_layout_test.rb | 3 +-
build/libcloud-pin.sh | 2 +-
.../ubuntu1204/Dockerfile | 33 --
.../package-test-dockerfiles/ubuntu1204/Dockerfile | 21 --
build/run-build-packages-all-targets.sh | 5 +
build/run-tests.sh | 34 +-
doc/_config.yml | 1 +
doc/user/cwl/cwl-run-options.html.textile.liquid | 2 +-
.../topics/arv-sync-groups.html.textile.liquid | 53 +++
docker/jobs/apt.arvados.org.list | 1 +
sdk/cwl/arvados_cwl/__init__.py | 1 -
sdk/cwl/arvados_cwl/arvworkflow.py | 21 +-
sdk/cwl/setup.py | 2 +-
sdk/cwl/tests/arvados-tests.sh | 2 +-
sdk/cwl/tests/arvados-tests.yml | 6 +
sdk/cwl/tests/wf/{scatter2.cwl => runin-wf.cwl} | 30 +-
sdk/go/asyncbuf/buf.go | 108 ++++++
sdk/go/asyncbuf/buf_test.go | 245 +++++++++++++
sdk/go/httpserver/id_generator.go | 33 +-
sdk/go/httpserver/logger.go | 82 +++++
sdk/go/httpserver/logger_test.go | 68 ++++
sdk/go/keepclient/hashcheck.go | 15 +-
sdk/go/keepclient/keepclient.go | 17 +-
sdk/go/keepclient/keepclient_test.go | 16 +-
sdk/go/keepclient/support.go | 20 +-
sdk/go/streamer/streamer.go | 158 ---------
sdk/go/streamer/streamer_test.go | 381 ---------------------
sdk/go/streamer/transfer.go | 310 -----------------
sdk/python/arvados/commands/get.py | 2 +-
sdk/python/tests/test_arv_get.py | 7 +
services/api/Gemfile | 1 -
services/api/Gemfile.lock | 2 -
.../api/app/controllers/application_controller.rb | 2 +-
.../v1/api_client_authorizations_controller.rb | 20 +-
.../controllers/arvados/v1/schema_controller.rb | 1 +
services/api/app/middlewares/arvados_api_token.rb | 34 +-
.../arvados/v1/schema_controller_test.rb | 10 +-
.../api_client_authorizations_scopes_test.rb | 14 +
.../api/test/integration/reader_tokens_test.rb | 23 +-
services/crunch-run/crunchrun.go | 59 +++-
services/crunch-run/crunchrun_test.go | 72 +++-
services/keepproxy/keepproxy.go | 14 +-
services/keepproxy/keepproxy_test.go | 62 +++-
services/keepproxy/proxy_client.go | 6 +-
services/keepstore/handler_test.go | 2 +-
services/keepstore/keepstore.go | 4 +-
services/keepstore/logging_router.go | 111 ------
services/keepstore/logging_router_test.go | 14 -
services/keepstore/s3_volume.go | 2 +
.../nodemanager/arvnodeman/test/fake_driver.py | 2 +-
services/nodemanager/setup.py | 4 +-
tools/arvbox/bin/arvbox | 9 +
tools/arvbox/lib/arvbox/docker/Dockerfile.base | 5 +-
tools/arvbox/lib/arvbox/docker/Dockerfile.demo | 5 +-
tools/arvbox/lib/arvbox/docker/common.sh | 1 +
tools/arvbox/lib/arvbox/docker/createusers.sh | 1 +
.../{workbench => composer}/log/main/.gitstub | 0
.../docker/service/{workbench => composer}/log/run | 0
.../arvbox/docker/service/{sdk => composer}/run | 3 +-
.../lib/arvbox/docker/service/composer/run-service | 22 ++
.../lib/arvbox/docker/service/sso/run-service | 5 +-
.../arvbox/lib/arvbox/docker/service/workbench/run | 6 +
.../arvbox/docker/service/workbench/run-service | 3 +
75 files changed, 1106 insertions(+), 1277 deletions(-)
rename apps/workbench/app/assets/javascripts/components/{collections.js => search.js} (65%)
rename apps/workbench/app/views/{collections/multisite.html => search/index.html} (66%)
delete mode 100644 build/package-build-dockerfiles/ubuntu1204/Dockerfile
delete mode 100644 build/package-test-dockerfiles/ubuntu1204/Dockerfile
create mode 100644 doc/user/topics/arv-sync-groups.html.textile.liquid
copy sdk/cwl/tests/wf/{scatter2.cwl => runin-wf.cwl} (69%)
create mode 100644 sdk/go/asyncbuf/buf.go
create mode 100644 sdk/go/asyncbuf/buf_test.go
create mode 100644 sdk/go/httpserver/logger.go
create mode 100644 sdk/go/httpserver/logger_test.go
delete mode 100644 sdk/go/streamer/streamer.go
delete mode 100644 sdk/go/streamer/streamer_test.go
delete mode 100644 sdk/go/streamer/transfer.go
delete mode 100644 services/keepstore/logging_router.go
delete mode 100644 services/keepstore/logging_router_test.go
copy tools/arvbox/lib/arvbox/docker/service/{workbench => composer}/log/main/.gitstub (100%)
copy tools/arvbox/lib/arvbox/docker/service/{workbench => composer}/log/run (100%)
copy tools/arvbox/lib/arvbox/docker/service/{sdk => composer}/run (68%)
create mode 100755 tools/arvbox/lib/arvbox/docker/service/composer/run-service
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Those revisions listed above that are new to this repository have
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commit c7399ec7afdf0cfdd0f3177f410f102083a26e15
Merge: d921ce5 5c8b4fc
Author: Tom Clegg <tclegg at veritasgenetics.com>
Date: Thu Nov 30 15:06:00 2017 -0500
12483: Merge branch 'master' into 12483-writable-fs
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg at veritasgenetics.com>
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