[ARVADOS] updated: 1.1.0-273-g1cb2f6a

Git user git at public.curoverse.com
Thu Nov 23 09:52:15 EST 2017


Summary of changes:
 apps/workbench/Gemfile.lock                        |  30 +-
 .../assets/javascripts/components/collections.js   |  13 +-
 .../app/assets/javascripts/models/session_db.js    |  28 +
 .../workbench/app/assets/javascripts/to_tsquery.js |   8 +-
 .../app/assets/stylesheets/application.css.scss    |   4 +
 .../app/controllers/application_controller.rb      |  21 +-
 .../app/controllers/projects_controller.rb         |  25 +-
 .../app/controllers/trash_items_controller.rb      |  91 ++-
 apps/workbench/app/models/arvados_api_client.rb    |  15 +-
 apps/workbench/app/models/group.rb                 |   4 +
 apps/workbench/app/views/application/404.html.erb  |  57 +-
 .../app/views/projects/_show_dashboard.html.erb    |  37 +-
 .../views/trash_items/_show_trash_rows.html.erb    |  55 +-
 .../_show_trashed_collection_rows.html.erb         |   1 +
 ...html.erb => _show_trashed_collections.html.erb} |  22 +-
 .../_show_trashed_project_rows.html.erb            |   1 +
 ...sh.html.erb => _show_trashed_projects.html.erb} |  24 +-
 .../app/views/trash_items/_untrash_item.html.erb   |   8 +-
 apps/workbench/config/initializers/lograge.rb      |  15 +-
 .../controllers/application_controller_test.rb     |  23 +-
 .../test/controllers/projects_controller_test.rb   |   5 +-
 .../test/integration/application_layout_test.rb    |   3 +-
 apps/workbench/test/integration/trash_test.rb      |  77 ++-
 build/run-library.sh                               |   2 +-
 build/run-tests.sh                                 |  39 +-
 .../_container_runtime_constraints.liquid          |   2 +-
 .../_container_scheduling_parameters.liquid        |   2 +-
 doc/_includes/_mount_types.liquid                  |   6 +-
 .../methods/container_requests.html.textile.liquid |   2 +-
 sdk/cli/bin/crunch-job                             |  14 +-
 sdk/cli/test/test_arv-keep-get.rb                  |   2 +-
 sdk/cwl/arvados_cwl/arvworkflow.py                 |  21 +-
 sdk/cwl/arvados_cwl/fsaccess.py                    |  36 +-
 sdk/cwl/setup.py                                   |   4 +-
 sdk/cwl/tests/arvados-tests.sh                     |   2 +-
 sdk/cwl/tests/arvados-tests.yml                    |   6 +
 sdk/cwl/tests/test_fsaccess.py                     |  76 +++
 sdk/cwl/tests/wf/{scatter2.cwl => runin-wf.cwl}    |  30 +-
 sdk/go/arvados/collection_fs.go                    |  83 ++-
 sdk/go/arvados/group.go                            |  20 +
 sdk/go/arvados/link.go                             |  25 +
 sdk/go/arvados/user.go                             |   9 +
 sdk/python/arvados/collection.py                   |  84 +--
 sdk/python/arvados/commands/get.py                 |  34 +-
 sdk/python/setup.py                                |   2 +-
 sdk/python/tests/test_arv_get.py                   |   7 +
 sdk/python/tests/test_collections.py               |  64 +-
 services/api/Gemfile                               |   1 -
 services/api/Gemfile.lock                          |  36 +-
 .../api/app/controllers/application_controller.rb  |  20 +
 .../v1/api_client_authorizations_controller.rb     |  20 +-
 .../controllers/arvados/v1/schema_controller.rb    |   1 +
 services/api/app/middlewares/arvados_api_token.rb  |   5 -
 .../api/config/environments/production.rb.example  |   1 +
 services/api/config/initializers/lograge.rb        |  10 +-
 .../20171027183824_add_index_to_containers.rb      |  11 +
 services/api/db/structure.sql                      |  16 +
 services/api/lib/trashable.rb                      |   2 +-
 services/api/test/fixtures/groups.yml              |   3 +
 .../test/functional/application_controller_test.rb |  22 +
 .../arvados/v1/schema_controller_test.rb           |  10 +-
 services/arv-git-httpd/auth_handler.go             |  23 +
 services/arv-git-httpd/auth_handler_test.go        |  54 ++
 services/crunch-run/crunchrun.go                   | 362 +++++++----
 services/crunch-run/crunchrun_test.go              | 147 ++++-
 services/crunch-run/upload.go                      |  66 +-
 services/crunch-run/upload_test.go                 |  39 +-
 services/dockercleaner/setup.py                    |   2 +-
 services/fuse/arvados_fuse/fusedir.py              |  13 +-
 services/fuse/arvados_fuse/unmount.py              |  91 ++-
 services/fuse/setup.py                             |   2 +-
 services/fuse/tests/test_mount.py                  |  57 +-
 services/fuse/tests/test_unmount.py                |  46 ++
 services/keep-web/cache.go                         |   8 +-
 services/keep-web/cadaver_test.go                  |  60 ++
 services/keep-web/handler.go                       |  74 ++-
 services/keep-web/handler_test.go                  |  58 +-
 services/keep-web/main.go                          |   1 +
 services/keep-web/usage.go                         |   6 +-
 services/keep-web/webdav.go                        | 182 ++++++
 services/nodemanager/setup.py                      |   2 +-
 tools/arv-sync-groups/.gitignore                   |   1 +
 tools/arv-sync-groups/arv-sync-groups.go           | 680 +++++++++++++++++++++
 tools/arv-sync-groups/arv-sync-groups_test.go      | 413 +++++++++++++
 tools/arvbox/lib/arvbox/docker/Dockerfile.base     |   2 +-
 .../crunchstat_summary/command.py                  |   2 +-
 .../crunchstat_summary/dygraphs.js                 |  35 +-
 .../crunchstat_summary/summarizer.py               |  17 +-
 vendor/vendor.json                                 |  12 +
 89 files changed, 3095 insertions(+), 657 deletions(-)
 create mode 120000 apps/workbench/app/views/trash_items/_show_trashed_collection_rows.html.erb
 copy apps/workbench/app/views/trash_items/{_show_recent_trash.html.erb => _show_trashed_collections.html.erb} (76%)
 create mode 120000 apps/workbench/app/views/trash_items/_show_trashed_project_rows.html.erb
 rename apps/workbench/app/views/trash_items/{_show_recent_trash.html.erb => _show_trashed_projects.html.erb} (75%)
 copy sdk/cwl/tests/wf/{scatter2.cwl => runin-wf.cwl} (69%)
 create mode 100644 sdk/go/arvados/group.go
 create mode 100644 sdk/go/arvados/link.go
 create mode 100644 services/api/db/migrate/20171027183824_add_index_to_containers.rb
 create mode 100644 services/arv-git-httpd/auth_handler_test.go
 create mode 100644 services/keep-web/cadaver_test.go
 create mode 100644 services/keep-web/webdav.go
 create mode 100644 tools/arv-sync-groups/.gitignore
 create mode 100644 tools/arv-sync-groups/arv-sync-groups.go
 create mode 100644 tools/arv-sync-groups/arv-sync-groups_test.go

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commit 1cb2f6a1b07e44be8fe83e85b5066026d725225d
Author: Fernando Monserrat <fernando.monserrat at gmail.com>
Date:   Thu Nov 23 11:52:03 2017 -0300

    12389: new build for Roche including changes from master up to 197d9db51a
    Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat at veritasgenetics.com>

diff --git a/build/run-library.sh b/build/run-library.sh
index dc9a3c6..73d07cf 100755
--- a/build/run-library.sh
+++ b/build/run-library.sh
@@ -47,7 +47,7 @@ version_from_latest_tag() {
   vnum1=${version_bits[0]}
   vnum2=${version_bits[1]}
   vnum3=${version_bits[2]}
-  vnum3=$((vnum3))
+  vnum3=$((vnum3+1))
   #vnum4=$(curl --silent https://ci.curoverse.com/job/new-versioning-build-packages-centos7/lastBuild/buildNumber)
   #create new tag
   new_version_tag="$vnum1.$vnum2.$vnum3"
diff --git a/sdk/cwl/setup.py b/sdk/cwl/setup.py
index 26c8929..1a9c07d 100644
--- a/sdk/cwl/setup.py
+++ b/sdk/cwl/setup.py
@@ -33,7 +33,7 @@ except Exception as e:
         raise
 
 setup(name='arvados-cwl-runner',
-      version="1.1.0",
+      version="1.1.1",
       description='Arvados Common Workflow Language runner',
       long_description=open(README).read(),
       author='Arvados',
diff --git a/sdk/python/setup.py b/sdk/python/setup.py
index ddb8cd1..262e291 100644
--- a/sdk/python/setup.py
+++ b/sdk/python/setup.py
@@ -24,7 +24,7 @@ if '--short-tests-only' in sys.argv:
     sys.argv.remove('--short-tests-only')
 
 setup(name='arvados-python-client',
-      version="1.1.0",
+      version="1.1.1",
       description='Arvados client library',
       long_description=open(README).read(),
       author='Arvados',
diff --git a/services/dockercleaner/setup.py b/services/dockercleaner/setup.py
index cb5b7e4..8c9a9a5 100644
--- a/services/dockercleaner/setup.py
+++ b/services/dockercleaner/setup.py
@@ -16,7 +16,7 @@ except ImportError:
     tagger = egg_info_cmd.egg_info
 
 setup(name="arvados-docker-cleaner",
-      version="1.1.0",
+      version="1.1.1",
       description="Arvados Docker cleaner",
       author="Arvados",
       author_email="info at arvados.org",
diff --git a/services/fuse/setup.py b/services/fuse/setup.py
index 1ae713a..55d44bb 100644
--- a/services/fuse/setup.py
+++ b/services/fuse/setup.py
@@ -24,7 +24,7 @@ if '--short-tests-only' in sys.argv:
     sys.argv.remove('--short-tests-only')
 
 setup(name='arvados_fuse',
-      version="1.1.0",
+      version="1.1.1",
       description='Arvados FUSE driver',
       long_description=open(README).read(),
       author='Arvados',
diff --git a/services/nodemanager/setup.py b/services/nodemanager/setup.py
index a24891f..e19bb53 100644
--- a/services/nodemanager/setup.py
+++ b/services/nodemanager/setup.py
@@ -19,7 +19,7 @@ except ImportError:
     tagger = egg_info_cmd.egg_info
 
 setup(name='arvados-node-manager',
-      version="1.1.0",
+      version="1.1.1",
       description='Arvados compute node manager',
       long_description=open(README).read(),
       author='Arvados',

commit ad7649c3d22babafe4118acd7993f07eb7144e59
Merge: 0788cce 197d9db
Author: Fernando Monserrat <fernando.monserrat at gmail.com>
Date:   Thu Nov 23 11:37:22 2017 -0300

    refs 12389: Merge branch '12513-make-dashboard-fast-again' into 12389-git-from-tag
    Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat at veritasgenetics.com>

diff --cc sdk/cwl/setup.py
index c2acea0,577295c..26c8929
--- a/sdk/cwl/setup.py
+++ b/sdk/cwl/setup.py
@@@ -51,10 -52,10 +51,10 @@@ setup(name='arvados-cwl-runner'
        # file to determine what version of cwltool and schema-salad to build.
        install_requires=[
            'cwltool==1.0.20170928192020',
-           'schema-salad==2.6.20170927145003',
+           'schema-salad==2.6.20171116190026',
            'typing==3.5.3.0',
            'ruamel.yaml==0.13.7',
 -          'arvados-python-client>=0.1.20170526013812',
 +          'arvados-python-client>=1.1.0',
            'setuptools',
            'ciso8601 >=1.0.0, <=1.0.4',
        ],

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