[ARVADOS] updated: 1.1.0-273-g1cb2f6a
Git user
git at public.curoverse.com
Thu Nov 23 09:52:15 EST 2017
Summary of changes:
apps/workbench/Gemfile.lock | 30 +-
.../assets/javascripts/components/collections.js | 13 +-
.../app/assets/javascripts/models/session_db.js | 28 +
.../workbench/app/assets/javascripts/to_tsquery.js | 8 +-
.../app/assets/stylesheets/application.css.scss | 4 +
.../app/controllers/application_controller.rb | 21 +-
.../app/controllers/projects_controller.rb | 25 +-
.../app/controllers/trash_items_controller.rb | 91 ++-
apps/workbench/app/models/arvados_api_client.rb | 15 +-
apps/workbench/app/models/group.rb | 4 +
apps/workbench/app/views/application/404.html.erb | 57 +-
.../app/views/projects/_show_dashboard.html.erb | 37 +-
.../views/trash_items/_show_trash_rows.html.erb | 55 +-
.../_show_trashed_collection_rows.html.erb | 1 +
...html.erb => _show_trashed_collections.html.erb} | 22 +-
.../_show_trashed_project_rows.html.erb | 1 +
...sh.html.erb => _show_trashed_projects.html.erb} | 24 +-
.../app/views/trash_items/_untrash_item.html.erb | 8 +-
apps/workbench/config/initializers/lograge.rb | 15 +-
.../controllers/application_controller_test.rb | 23 +-
.../test/controllers/projects_controller_test.rb | 5 +-
.../test/integration/application_layout_test.rb | 3 +-
apps/workbench/test/integration/trash_test.rb | 77 ++-
build/run-library.sh | 2 +-
build/run-tests.sh | 39 +-
.../_container_runtime_constraints.liquid | 2 +-
.../_container_scheduling_parameters.liquid | 2 +-
doc/_includes/_mount_types.liquid | 6 +-
.../methods/container_requests.html.textile.liquid | 2 +-
sdk/cli/bin/crunch-job | 14 +-
sdk/cli/test/test_arv-keep-get.rb | 2 +-
sdk/cwl/arvados_cwl/arvworkflow.py | 21 +-
sdk/cwl/arvados_cwl/fsaccess.py | 36 +-
sdk/cwl/setup.py | 4 +-
sdk/cwl/tests/arvados-tests.sh | 2 +-
sdk/cwl/tests/arvados-tests.yml | 6 +
sdk/cwl/tests/test_fsaccess.py | 76 +++
sdk/cwl/tests/wf/{scatter2.cwl => runin-wf.cwl} | 30 +-
sdk/go/arvados/collection_fs.go | 83 ++-
sdk/go/arvados/group.go | 20 +
sdk/go/arvados/link.go | 25 +
sdk/go/arvados/user.go | 9 +
sdk/python/arvados/collection.py | 84 +--
sdk/python/arvados/commands/get.py | 34 +-
sdk/python/setup.py | 2 +-
sdk/python/tests/test_arv_get.py | 7 +
sdk/python/tests/test_collections.py | 64 +-
services/api/Gemfile | 1 -
services/api/Gemfile.lock | 36 +-
.../api/app/controllers/application_controller.rb | 20 +
.../v1/api_client_authorizations_controller.rb | 20 +-
.../controllers/arvados/v1/schema_controller.rb | 1 +
services/api/app/middlewares/arvados_api_token.rb | 5 -
.../api/config/environments/production.rb.example | 1 +
services/api/config/initializers/lograge.rb | 10 +-
.../20171027183824_add_index_to_containers.rb | 11 +
services/api/db/structure.sql | 16 +
services/api/lib/trashable.rb | 2 +-
services/api/test/fixtures/groups.yml | 3 +
.../test/functional/application_controller_test.rb | 22 +
.../arvados/v1/schema_controller_test.rb | 10 +-
services/arv-git-httpd/auth_handler.go | 23 +
services/arv-git-httpd/auth_handler_test.go | 54 ++
services/crunch-run/crunchrun.go | 362 +++++++----
services/crunch-run/crunchrun_test.go | 147 ++++-
services/crunch-run/upload.go | 66 +-
services/crunch-run/upload_test.go | 39 +-
services/dockercleaner/setup.py | 2 +-
services/fuse/arvados_fuse/fusedir.py | 13 +-
services/fuse/arvados_fuse/unmount.py | 91 ++-
services/fuse/setup.py | 2 +-
services/fuse/tests/test_mount.py | 57 +-
services/fuse/tests/test_unmount.py | 46 ++
services/keep-web/cache.go | 8 +-
services/keep-web/cadaver_test.go | 60 ++
services/keep-web/handler.go | 74 ++-
services/keep-web/handler_test.go | 58 +-
services/keep-web/main.go | 1 +
services/keep-web/usage.go | 6 +-
services/keep-web/webdav.go | 182 ++++++
services/nodemanager/setup.py | 2 +-
tools/arv-sync-groups/.gitignore | 1 +
tools/arv-sync-groups/arv-sync-groups.go | 680 +++++++++++++++++++++
tools/arv-sync-groups/arv-sync-groups_test.go | 413 +++++++++++++
tools/arvbox/lib/arvbox/docker/Dockerfile.base | 2 +-
.../crunchstat_summary/command.py | 2 +-
.../crunchstat_summary/dygraphs.js | 35 +-
.../crunchstat_summary/summarizer.py | 17 +-
vendor/vendor.json | 12 +
89 files changed, 3095 insertions(+), 657 deletions(-)
create mode 120000 apps/workbench/app/views/trash_items/_show_trashed_collection_rows.html.erb
copy apps/workbench/app/views/trash_items/{_show_recent_trash.html.erb => _show_trashed_collections.html.erb} (76%)
create mode 120000 apps/workbench/app/views/trash_items/_show_trashed_project_rows.html.erb
rename apps/workbench/app/views/trash_items/{_show_recent_trash.html.erb => _show_trashed_projects.html.erb} (75%)
copy sdk/cwl/tests/wf/{scatter2.cwl => runin-wf.cwl} (69%)
create mode 100644 sdk/go/arvados/group.go
create mode 100644 sdk/go/arvados/link.go
create mode 100644 services/api/db/migrate/20171027183824_add_index_to_containers.rb
create mode 100644 services/arv-git-httpd/auth_handler_test.go
create mode 100644 services/keep-web/cadaver_test.go
create mode 100644 services/keep-web/webdav.go
create mode 100644 tools/arv-sync-groups/.gitignore
create mode 100644 tools/arv-sync-groups/arv-sync-groups.go
create mode 100644 tools/arv-sync-groups/arv-sync-groups_test.go
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from 0788cceec31fb87d420ca3b7dd8e18e63659fa84 (commit)
Those revisions listed above that are new to this repository have
not appeared on any other notification email; so we list those
revisions in full, below.
commit 1cb2f6a1b07e44be8fe83e85b5066026d725225d
Author: Fernando Monserrat <fernando.monserrat at gmail.com>
Date: Thu Nov 23 11:52:03 2017 -0300
12389: new build for Roche including changes from master up to 197d9db51a
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat at veritasgenetics.com>
diff --git a/build/run-library.sh b/build/run-library.sh
index dc9a3c6..73d07cf 100755
--- a/build/run-library.sh
+++ b/build/run-library.sh
@@ -47,7 +47,7 @@ version_from_latest_tag() {
vnum1=${version_bits[0]}
vnum2=${version_bits[1]}
vnum3=${version_bits[2]}
- vnum3=$((vnum3))
+ vnum3=$((vnum3+1))
#vnum4=$(curl --silent https://ci.curoverse.com/job/new-versioning-build-packages-centos7/lastBuild/buildNumber)
#create new tag
new_version_tag="$vnum1.$vnum2.$vnum3"
diff --git a/sdk/cwl/setup.py b/sdk/cwl/setup.py
index 26c8929..1a9c07d 100644
--- a/sdk/cwl/setup.py
+++ b/sdk/cwl/setup.py
@@ -33,7 +33,7 @@ except Exception as e:
raise
setup(name='arvados-cwl-runner',
- version="1.1.0",
+ version="1.1.1",
description='Arvados Common Workflow Language runner',
long_description=open(README).read(),
author='Arvados',
diff --git a/sdk/python/setup.py b/sdk/python/setup.py
index ddb8cd1..262e291 100644
--- a/sdk/python/setup.py
+++ b/sdk/python/setup.py
@@ -24,7 +24,7 @@ if '--short-tests-only' in sys.argv:
sys.argv.remove('--short-tests-only')
setup(name='arvados-python-client',
- version="1.1.0",
+ version="1.1.1",
description='Arvados client library',
long_description=open(README).read(),
author='Arvados',
diff --git a/services/dockercleaner/setup.py b/services/dockercleaner/setup.py
index cb5b7e4..8c9a9a5 100644
--- a/services/dockercleaner/setup.py
+++ b/services/dockercleaner/setup.py
@@ -16,7 +16,7 @@ except ImportError:
tagger = egg_info_cmd.egg_info
setup(name="arvados-docker-cleaner",
- version="1.1.0",
+ version="1.1.1",
description="Arvados Docker cleaner",
author="Arvados",
author_email="info at arvados.org",
diff --git a/services/fuse/setup.py b/services/fuse/setup.py
index 1ae713a..55d44bb 100644
--- a/services/fuse/setup.py
+++ b/services/fuse/setup.py
@@ -24,7 +24,7 @@ if '--short-tests-only' in sys.argv:
sys.argv.remove('--short-tests-only')
setup(name='arvados_fuse',
- version="1.1.0",
+ version="1.1.1",
description='Arvados FUSE driver',
long_description=open(README).read(),
author='Arvados',
diff --git a/services/nodemanager/setup.py b/services/nodemanager/setup.py
index a24891f..e19bb53 100644
--- a/services/nodemanager/setup.py
+++ b/services/nodemanager/setup.py
@@ -19,7 +19,7 @@ except ImportError:
tagger = egg_info_cmd.egg_info
setup(name='arvados-node-manager',
- version="1.1.0",
+ version="1.1.1",
description='Arvados compute node manager',
long_description=open(README).read(),
author='Arvados',
commit ad7649c3d22babafe4118acd7993f07eb7144e59
Merge: 0788cce 197d9db
Author: Fernando Monserrat <fernando.monserrat at gmail.com>
Date: Thu Nov 23 11:37:22 2017 -0300
refs 12389: Merge branch '12513-make-dashboard-fast-again' into 12389-git-from-tag
Arvados-DCO-1.1-Signed-off-by: Fernando Monserrat <fmonserrat at veritasgenetics.com>
diff --cc sdk/cwl/setup.py
index c2acea0,577295c..26c8929
--- a/sdk/cwl/setup.py
+++ b/sdk/cwl/setup.py
@@@ -51,10 -52,10 +51,10 @@@ setup(name='arvados-cwl-runner'
# file to determine what version of cwltool and schema-salad to build.
install_requires=[
'cwltool==1.0.20170928192020',
- 'schema-salad==2.6.20170927145003',
+ 'schema-salad==2.6.20171116190026',
'typing==3.5.3.0',
'ruamel.yaml==0.13.7',
- 'arvados-python-client>=0.1.20170526013812',
+ 'arvados-python-client>=1.1.0',
'setuptools',
'ciso8601 >=1.0.0, <=1.0.4',
],
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