[ARVADOS] updated: 456dde006228871c522597abbc5fe8006e44ad4d

Git user git at public.curoverse.com
Wed May 24 10:56:55 EDT 2017


Summary of changes:
 sdk/cwl/arvados_cwl/__init__.py                    |   9 +-
 sdk/cwl/arvados_cwl/arv-cwl-schema.yml             |   6 ++
 sdk/cwl/arvados_cwl/fsaccess.py                    |   7 +-
 sdk/cwl/arvados_cwl/pathmapper.py                  |  62 +++++++----
 sdk/cwl/arvados_cwl/runner.py                      |   6 +-
 sdk/cwl/setup.py                                   |   2 +-
 .../cwl/tests/collection_per_tool/a.txt            |   0
 .../cwl/tests/collection_per_tool/b.txt            |   0
 .../cwl/tests/collection_per_tool/c.txt            |   0
 .../collection_per_tool/collection_per_tool.cwl    |  13 +++
 .../collection_per_tool_packed.cwl                 |  45 ++++++++
 sdk/cwl/tests/collection_per_tool/step1.cwl        |  15 +++
 sdk/cwl/tests/collection_per_tool/step2.cwl        |  15 +++
 sdk/cwl/tests/test_pathmapper.py                   |   6 +-
 sdk/cwl/tests/test_submit.py                       | 117 +++++++++++++--------
 sdk/cwl/tests/wf/expect_packed.cwl                 |   4 +-
 sdk/cwl/tests/wf/submit_wf_packed.cwl              |   2 +-
 17 files changed, 228 insertions(+), 81 deletions(-)
 copy tools/crunchstat-summary/tests/__init__.py => sdk/cwl/tests/collection_per_tool/a.txt (100%)
 copy tools/crunchstat-summary/tests/__init__.py => sdk/cwl/tests/collection_per_tool/b.txt (100%)
 copy tools/crunchstat-summary/tests/__init__.py => sdk/cwl/tests/collection_per_tool/c.txt (100%)
 create mode 100644 sdk/cwl/tests/collection_per_tool/collection_per_tool.cwl
 create mode 100644 sdk/cwl/tests/collection_per_tool/collection_per_tool_packed.cwl
 create mode 100644 sdk/cwl/tests/collection_per_tool/step1.cwl
 create mode 100644 sdk/cwl/tests/collection_per_tool/step2.cwl

       via  456dde006228871c522597abbc5fe8006e44ad4d (commit)
       via  f60885adec1fe9a7b92f30ffbd4f5bb112e1aeae (commit)
       via  72a4000d8dc81879afae18ca440ab2ffaf712823 (commit)
      from  df6578e918d8c29baf314e671c28a96aea1c1d00 (commit)

Those revisions listed above that are new to this repository have
not appeared on any other notification email; so we list those
revisions in full, below.


commit 456dde006228871c522597abbc5fe8006e44ad4d
Merge: df6578e f60885a
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date:   Wed May 24 10:56:49 2017 -0400

    Merge branch '11543-collection-per-tool' closes #11543


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