[ARVADOS] updated: b9b4502bcddeccd794614bf6979d643f9f350877
Git user
git at public.curoverse.com
Tue May 16 10:32:26 EDT 2017
Summary of changes:
.../app/controllers/workflows_controller.rb | 4 +
apps/workbench/app/helpers/application_helper.rb | 6 +
apps/workbench/app/models/container_work_unit.rb | 13 +-
apps/workbench/app/models/work_unit.rb | 4 +
.../application/_show_text_with_locators.html.erb | 31 ++
.../views/work_units/_component_detail.html.erb | 97 ++++-
.../app/views/work_units/_show_table_data.html.erb | 14 +
.../app/views/workflows/_show_definition.html.erb | 48 +++
apps/workbench/app/views/workflows/show.html.erb | 20 +
apps/workbench/fpm-info.sh | 9 +-
.../container_requests_controller_test.rb | 16 +
.../test/controllers/workflows_controller_test.rb | 12 +
apps/workbench/test/integration/work_units_test.rb | 17 +
.../ubuntu1604/Dockerfile | 2 +-
build/run-build-packages-one-target.sh | 8 +
build/run-library.sh | 8 +-
build/run-tests.sh | 113 +++---
doc/Rakefile | 3 +-
sdk/cwl/arvados_cwl/__init__.py | 11 +-
sdk/cwl/arvados_cwl/arvjob.py | 1 +
sdk/cwl/arvados_cwl/crunch_script.py | 3 +-
sdk/cwl/setup.py | 4 +-
sdk/cwl/tests/test_job.py | 2 +-
sdk/python/arvados/__init__.py | 55 +--
sdk/python/arvados/_normalize_stream.py | 5 +-
sdk/python/arvados/_ranges.py | 8 +-
sdk/python/arvados/api.py | 21 +-
sdk/python/arvados/arvfile.py | 106 +++---
sdk/python/arvados/cache.py | 9 +-
sdk/python/arvados/collection.py | 108 +++---
sdk/python/arvados/commands/_util.py | 2 -
sdk/python/arvados/commands/arv_copy.py | 24 +-
sdk/python/arvados/commands/get.py | 14 +-
sdk/python/arvados/commands/keepdocker.py | 11 +-
sdk/python/arvados/commands/ls.py | 5 +-
sdk/python/arvados/commands/migrate19.py | 21 +-
sdk/python/arvados/commands/put.py | 56 +--
sdk/python/arvados/commands/run.py | 15 +-
sdk/python/arvados/commands/ws.py | 5 +-
sdk/python/arvados/crunch.py | 1 +
sdk/python/arvados/errors.py | 4 +-
sdk/python/arvados/events.py | 31 +-
sdk/python/arvados/keep.py | 104 ++++--
sdk/python/arvados/retry.py | 8 +-
sdk/python/arvados/safeapi.py | 14 +-
sdk/python/arvados/stream.py | 30 +-
sdk/python/arvados/timer.py | 4 +-
sdk/python/arvados/util.py | 8 +-
sdk/python/bin/arv-get | 2 +-
sdk/python/setup.py | 9 +-
sdk/python/tests/arvados_testutil.py | 77 +++-
sdk/python/tests/keepstub.py | 130 +++++--
sdk/python/tests/manifest_examples.py | 5 +-
.../tests/performance/performance_profiler.py | 14 +-
sdk/python/tests/performance/test_a_sample.py | 7 +-
sdk/python/tests/run_test_server.py | 13 +-
sdk/python/tests/test_api.py | 27 +-
sdk/python/tests/test_arv_copy.py | 17 +-
sdk/python/tests/test_arv_get.py | 35 +-
sdk/python/tests/test_arv_keepdocker.py | 39 +-
sdk/python/tests/test_arv_ls.py | 25 +-
sdk/python/tests/test_arv_normalize.py | 25 +-
sdk/python/tests/test_arv_put.py | 79 ++--
sdk/python/tests/test_arv_run.py | 17 +-
sdk/python/tests/test_arv_ws.py | 16 +-
sdk/python/tests/test_arvfile.py | 343 +++++++++--------
sdk/python/tests/test_benchmark_collections.py | 11 +-
sdk/python/tests/test_cache.py | 20 +-
sdk/python/tests/test_collections.py | 410 ++++++++++++++-------
sdk/python/tests/test_errors.py | 21 +-
sdk/python/tests/test_events.py | 52 +--
sdk/python/tests/test_keep_client.py | 164 ++++-----
sdk/python/tests/test_keep_locator.py | 20 +-
sdk/python/tests/test_pipeline_template.py | 3 +-
sdk/python/tests/test_retry.py | 15 +-
sdk/python/tests/test_retry_job_helpers.py | 8 +-
sdk/python/tests/test_stream.py | 50 +--
sdk/python/tests/test_util.py | 6 +-
.../api/app/controllers/application_controller.rb | 32 +-
.../arvados/v1/collections_controller.rb | 4 -
.../controllers/arvados/v1/groups_controller.rb | 12 +-
.../controllers/arvados/v1/schema_controller.rb | 7 +
services/api/app/models/arvados_model.rb | 8 +
services/api/app/models/collection.rb | 4 +
services/api/app/models/container.rb | 4 +
services/api/app/models/container_request.rb | 4 +
services/api/app/models/job.rb | 91 ++++-
services/api/app/models/pipeline_instance.rb | 4 +
services/api/app/models/pipeline_template.rb | 4 +
services/api/app/models/workflow.rb | 4 +
services/api/config/application.default.yml | 35 +-
services/api/fpm-info.sh | 2 +-
services/api/test/fixtures/container_requests.yml | 33 ++
.../arvados/v1/groups_controller_test.rb | 15 +
services/api/test/unit/job_test.rb | 18 +-
.../crunch-dispatch-slurm/crunch-dispatch-slurm.go | 12 +-
.../crunch-dispatch-slurm_test.go | 91 +++--
services/crunch-run/crunchrun.go | 19 +-
services/crunch-run/crunchrun_test.go | 11 +-
services/crunch-run/logging.go | 234 +++++++++++-
services/crunch-run/logging_test.go | 43 +++
services/ws/config.go | 25 +-
services/ws/event_source.go | 9 +-
services/ws/server.go | 5 +-
tools/arvbox/lib/arvbox/docker/Dockerfile.base | 3 +-
105 files changed, 2347 insertions(+), 1161 deletions(-)
create mode 100644 apps/workbench/app/views/application/_show_text_with_locators.html.erb
create mode 100644 apps/workbench/app/views/work_units/_show_table_data.html.erb
create mode 100644 apps/workbench/app/views/workflows/_show_definition.html.erb
create mode 100644 apps/workbench/app/views/workflows/show.html.erb
mode change 100755 => 100644 sdk/python/arvados/commands/ls.py
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commit b9b4502bcddeccd794614bf6979d643f9f350877
Merge: 795bf00 ed56c26
Author: Lucas Di Pentima <lucas at curoverse.com>
Date: Tue May 16 11:32:11 2017 -0300
10111: Merge branch 'master' into 10111-collection-labels
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