[ARVADOS] updated: aa6a63fb550222ecb8353585ab7e19a2c1d261e4
Git user
git at public.curoverse.com
Mon May 8 14:00:00 EDT 2017
Summary of changes:
.../views/work_units/_component_detail.html.erb | 24 +-
build/run-tests.sh | 96 +++---
doc/Rakefile | 3 +-
sdk/python/arvados/__init__.py | 55 ++--
sdk/python/arvados/_normalize_stream.py | 5 +-
sdk/python/arvados/_ranges.py | 8 +-
sdk/python/arvados/api.py | 21 +-
sdk/python/arvados/arvfile.py | 104 ++++---
sdk/python/arvados/cache.py | 9 +-
sdk/python/arvados/collection.py | 106 ++++---
sdk/python/arvados/commands/_util.py | 2 -
sdk/python/arvados/commands/arv_copy.py | 24 +-
sdk/python/arvados/commands/get.py | 14 +-
sdk/python/arvados/commands/keepdocker.py | 11 +-
sdk/python/arvados/commands/ls.py | 5 +-
sdk/python/arvados/commands/migrate19.py | 21 +-
sdk/python/arvados/commands/put.py | 56 ++--
sdk/python/arvados/commands/run.py | 15 +-
sdk/python/arvados/commands/ws.py | 5 +-
sdk/python/arvados/crunch.py | 1 +
sdk/python/arvados/errors.py | 4 +-
sdk/python/arvados/events.py | 31 +-
sdk/python/arvados/keep.py | 98 +++---
sdk/python/arvados/retry.py | 8 +-
sdk/python/arvados/safeapi.py | 14 +-
sdk/python/arvados/stream.py | 30 +-
sdk/python/arvados/timer.py | 4 +-
sdk/python/arvados/util.py | 8 +-
sdk/python/bin/arv-get | 2 +-
sdk/python/setup.py | 9 +-
sdk/python/tests/arvados_testutil.py | 77 ++++-
sdk/python/tests/keepstub.py | 130 +++++---
sdk/python/tests/manifest_examples.py | 5 +-
.../tests/performance/performance_profiler.py | 14 +-
sdk/python/tests/performance/test_a_sample.py | 7 +-
sdk/python/tests/run_test_server.py | 13 +-
sdk/python/tests/test_api.py | 27 +-
sdk/python/tests/test_arv_copy.py | 17 +-
sdk/python/tests/test_arv_get.py | 35 +--
sdk/python/tests/test_arv_keepdocker.py | 39 +--
sdk/python/tests/test_arv_ls.py | 25 +-
sdk/python/tests/test_arv_normalize.py | 25 +-
sdk/python/tests/test_arv_put.py | 79 ++---
sdk/python/tests/test_arv_run.py | 17 +-
sdk/python/tests/test_arv_ws.py | 16 +-
sdk/python/tests/test_arvfile.py | 343 +++++++++++---------
sdk/python/tests/test_benchmark_collections.py | 11 +-
sdk/python/tests/test_cache.py | 20 +-
sdk/python/tests/test_collections.py | 344 ++++++++++++---------
sdk/python/tests/test_errors.py | 21 +-
sdk/python/tests/test_events.py | 52 ++--
sdk/python/tests/test_keep_client.py | 164 +++++-----
sdk/python/tests/test_keep_locator.py | 15 +-
sdk/python/tests/test_pipeline_template.py | 3 +-
sdk/python/tests/test_retry.py | 15 +-
sdk/python/tests/test_retry_job_helpers.py | 8 +-
sdk/python/tests/test_stream.py | 50 +--
sdk/python/tests/test_util.py | 6 +-
58 files changed, 1343 insertions(+), 1028 deletions(-)
mode change 100755 => 100644 sdk/python/arvados/commands/ls.py
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commit aa6a63fb550222ecb8353585ab7e19a2c1d261e4
Author: radhika <radhika at curoverse.com>
Date: Mon May 8 13:59:35 2017 -0400
10645: L&F improvements
diff --git a/apps/workbench/app/views/work_units/_component_detail.html.erb b/apps/workbench/app/views/work_units/_component_detail.html.erb
index 99ac759..1204e98 100644
--- a/apps/workbench/app/views/work_units/_component_detail.html.erb
+++ b/apps/workbench/app/views/work_units/_component_detail.html.erb
@@ -14,8 +14,8 @@
<% if current_obj.uuid.nil? %>
No <%= current_obj.title %> has been submitted yet.
<% else %>
- <table>
- <% keys = [:uuid, :modified_by_user_uuid, :created_at, :started_at, :finished_at, :container_uuid] %>
+ <table class="table table-condensed">
+ <% keys = [:uuid, :modified_by_user_uuid, :created_at, :started_at, :finished_at, :container_uuid, :priority] %>
<% keys << :log_collection if @object.uuid != current_obj.uuid %>
<% keys << :outputs %>
<% keys.each do |k| %>
@@ -60,14 +60,14 @@
<% end %>
</div>
<div class="col-md-6">
- <table>
+ <table class="table table-condensed">
<% # link to repo tree/file only if the repo is readable and the commit is a sha1
repo = (/^[0-9a-f]{40}$/ =~ current_obj.script_version and
current_obj.repository and
object_for_dataclass(Repository, current_obj.repository, :name))
repo = nil unless repo.andand.http_fetch_url
%>
- <% [:priority, :script, :repository, :script_version, :supplied_script_version, :nondeterministic,
+ <% [:script, :repository, :script_version, :supplied_script_version, :nondeterministic,
:runtime_constraints, :requesting_container_uuid].each do |k| %>
<% val = current_obj.send(k) if current_obj.respond_to?(k) %>
<% if val %>
@@ -143,8 +143,8 @@
</table>
</div>
- <div class="col-md-12">
- <table style="width:100%;">
+ <div class="col-md-11">
+ <table class="table table-condensed" style="table-layout:fixed;">
<col width="15%" />
<col width="85%" />
<% [:command].each do |k| %>
@@ -154,7 +154,7 @@
<td valign="top">
<%= k.to_s %>:
</td>
- <td>
+ <td style="word-wrap: break-all;">
<% if k == :command %>
<div style="max-height:200px; overflow-y:auto;">
<%=val%>
@@ -177,16 +177,16 @@
<td valign="top">
cwl.input.json:
</td>
- <td>
- <div style="max-height:200px; overflow:auto;">
+ <td style="word-wrap: break-all;">
+ <div style="max-height:400px; overflow:auto;">
<% mnt_inputs.each_line do |l| %>
<% text_part = l %>
<% match = l.match /(.*)(\"keep:.*?\")/ %>
<% if match and match.size == 3 %>
- <% text_part = match[1] %>
- <% loc_part = match[2][6..-2] %>
+ <% text_part = match[1] + '"keep:' %>
+ <% idx = match[2].rindex('"'); loc_part = match[2][6..idx-1] %>
<% end %>
- <span style="white-space: pre-wrap; margin: none;"><%= text_part %><%= if loc_part then link_to_arvados_object_if_readable(loc_part, loc_part, friendly_name: true) end %> <% if loc_part then %> <br/> <% end %></span>
+ <span style="white-space: pre-wrap; margin: none;"><%= text_part %><%= if loc_part then link_to_arvados_object_if_readable(loc_part, loc_part, friendly_name: true) end %><% if loc_part then %><%= match[2][idx] %><br/><% end %></span>
<% end %>
</div>
</td>
commit ee434dea5db0b02fe762ff80b2270cf268e84378
Merge: b58953e 9bf7904
Author: radhika <radhika at curoverse.com>
Date: Mon May 8 12:42:10 2017 -0400
Merge branch 'master' into 10645-cr-mounts-display
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