[ARVADOS] updated: 126a8a239853e46cef3d4b7e5acf7620c0bd1f36

[Git user]

Summary of changes:
 sdk/cwl/arvados_cwl/__init__.py | 2 ++
 sdk/cwl/arvados_cwl/fsaccess.py | 2 ++
 sdk/cwl/arvados_cwl/runner.py   | 3 ---
 sdk/cwl/setup.py                | 5 +++--
 4 files changed, 7 insertions(+), 5 deletions(-)

       via  126a8a239853e46cef3d4b7e5acf7620c0bd1f36 (commit)
       via  11e4219911b6a3ff8696c7a0401ce4dcaac64d5f (commit)
       via  71f0b2ccf5f82c5ff86e51c06060ef4a9234e6d3 (commit)
       via  fdc7164e11eb019122b6deb9054decb9fe0be0ce (commit)
       via  a774873482ade7b9dd0f9a607c97b848b77fb6f2 (commit)
      from  922e79bea1cb6d4df7cf1db48c4b73ebac03b64e (commit)

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commit 126a8a239853e46cef3d4b7e5acf7620c0bd1f36
Merge: fdc7164 11e4219
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date:   Tue Mar 28 16:01:50 2017 -0400

    Merge branch '11333-cwl-phone-home' closes #11333


commit 11e4219911b6a3ff8696c7a0401ce4dcaac64d5f
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date:   Tue Mar 28 12:57:25 2017 -0400

    11333: Add explicit version pin on 'typing'

diff --git a/sdk/cwl/setup.py b/sdk/cwl/setup.py
index ed384d2..46f61ae 100644
--- a/sdk/cwl/setup.py
+++ b/sdk/cwl/setup.py
@@ -50,6 +50,7 @@ setup(name='arvados-cwl-runner',
       install_requires=[
           'cwltool==1.0.20170224141733',
           'schema-salad==2.2.20170222151604',
+          'typing==3.5.3',
           'ruamel.yaml==0.13.7',
           'arvados-python-client>=0.1.20170112173420',
           'setuptools'

commit 71f0b2ccf5f82c5ff86e51c06060ef4a9234e6d3
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date:   Tue Mar 28 12:44:20 2017 -0400

    11332: Suppress phone-home behavior in check_exists by recognizing
    http://arvados.org/cwl and returning True.

diff --git a/sdk/cwl/arvados_cwl/fsaccess.py b/sdk/cwl/arvados_cwl/fsaccess.py
index 2191dcb..70aa69f 100644
--- a/sdk/cwl/arvados_cwl/fsaccess.py
+++ b/sdk/cwl/arvados_cwl/fsaccess.py
@@ -152,6 +152,8 @@ class CollectionFetcher(DefaultFetcher):
 
     def check_exists(self, url):
         try:
+            if url.startswith("http://arvados.org/cwl"):
+                return True
             if url.startswith("keep:"):
                 return self.fsaccess.exists(url)
             if url.startswith("arvwf:"):

commit fdc7164e11eb019122b6deb9054decb9fe0be0ce
Merge: 922e79b a774873
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date:   Tue Mar 28 15:50:02 2017 -0400

    Merge branch '11332-cwl-filenames' closes #11332


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