[ARVADOS] updated: 48f4c496e659bc28446bfd5aa2d469d5316d49cb

[Git user]

Summary of changes:
 .licenseignore                                     |  46 +++++
 apps/workbench/app/controllers/users_controller.rb |  20 +-
 build/check-copyright-notices                      | 201 +++++++++++++++++++++
 build/{libcloud-pin => libcloud-pin.sh}            |   0
 build/run-build-packages-python-and-ruby.sh        |   2 +-
 build/run-build-packages.sh                        |   2 +-
 build/run-tests.sh                                 |   2 +-
 doc/start/index.html.textile.liquid.bkup           |  50 -----
 sdk/cwl/arvados_cwl/__init__.py                    |   3 +-
 sdk/cwl/arvados_cwl/arvjob.py                      |   9 +
 sdk/cwl/arvados_cwl/done.py                        |  62 ++++---
 sdk/cwl/test_with_arvbox.sh                        |  18 +-
 sdk/cwl/tests/test_job.py                          |  68 ++++++-
 .../arvados/v1/repositories_controller.rb          |  17 +-
 .../app/controllers/arvados/v1/users_controller.rb |  12 +-
 services/api/app/models/node.rb                    |  29 ++-
 services/api/app/models/user.rb                    |  66 ++++---
 services/api/lib/can_be_an_owner.rb                |  42 +++--
 .../functional/arvados/v1/users_controller_test.rb |  18 ++
 services/api/test/unit/node_test.rb                |  21 ++-
 services/api/test/unit/user_test.rb                |  17 +-
 services/keep-web/cache.go                         |   1 -
 services/keep-web/cache_test.go                    |   4 +-
 tools/arvbox/bin/arvbox                            |   2 +-
 tools/arvbox/lib/arvbox/docker/Dockerfile.base     |   3 +-
 25 files changed, 520 insertions(+), 195 deletions(-)
 create mode 100644 .licenseignore
 create mode 100755 build/check-copyright-notices
 rename build/{libcloud-pin => libcloud-pin.sh} (100%)
 delete mode 100644 doc/start/index.html.textile.liquid.bkup

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commit 48f4c496e659bc28446bfd5aa2d469d5316d49cb
Author: radhika <radhika at curoverse.com>
Date:   Mon Jun 19 15:57:01 2017 -0400

    11060: accessbile repositories query
    
    Arvados-DCO-1.1-Signed-off-by: Radhika Chippada <radhika at curoverse.com>

diff --git a/apps/workbench/app/controllers/users_controller.rb b/apps/workbench/app/controllers/users_controller.rb
index d3acf58..6f527cd 100644
--- a/apps/workbench/app/controllers/users_controller.rb
+++ b/apps/workbench/app/controllers/users_controller.rb
@@ -258,16 +258,9 @@ class UsersController < ApplicationController
 
   def repositories
     # all repositories accessible by current user
-    all_repositories = Hash[Repository.where(authorized_user_uuid: current_user.uuid).collect {|repo| [repo.uuid, repo]}]
+    all_repositories = Hash[Repository.all.order(:name).collect {|repo| [repo.uuid, repo]}]
 
-    # repositories shared with the user
-    repo_links = Link.
-      filter([['head_uuid', 'is_a', 'arvados#repository'],
-              ['tail_uuid', '=', current_user.uuid],
-              ['link_class', '=', 'permission'],
-             ])
-
-    @my_repositories = [] # we want them ordered as owned, manageable, and the rest
+    @my_repositories = [] # we want them ordered as owned and the rest
     @repo_writable = {}
 
     # owned repos
@@ -278,15 +271,6 @@ class UsersController < ApplicationController
       end
     end
 
-    # shared and either writable or manageable
-    handled = @my_repositories.map(&:uuid)
-    repo_links.each do |link|
-      if link.name.in? ['can_write', 'can_manage']
-        @repo_writable[link.head_uuid] = link.name
-        @my_repositories << all_repositories[link.head_uuid] if !link.head_uuid.in?(handled)
-      end
-    end
-
     # rest of the repos
     handled = @my_repositories.map(&:uuid)
     all_repositories.each do |_, repo|

commit e7672a0b679659d6ba90d23b4e102fba747fa9ef
Merge: 4b056c3 4db4e97
Author: radhika <radhika at curoverse.com>
Date:   Mon Jun 19 14:24:15 2017 -0400

    Merge branch 'master' into 11060-all-visible-repos


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