[ARVADOS] created: 7f3cb29c2274ce3ebdc84465f5ccfbd975d90b67

[Git user]

        at  7f3cb29c2274ce3ebdc84465f5ccfbd975d90b67 (commit)


commit 7f3cb29c2274ce3ebdc84465f5ccfbd975d90b67
Author: radhika <radhika at curoverse.com>
Date:   Mon Jul 10 14:13:12 2017 -0400

    11857: arvados-cwl-runner defaults to crunch2 if available
    
    Arvados-DCO-1.1-Signed-off-by: Radhika Chippada <radhika at curoverse.com>

diff --git a/sdk/cwl/arvados_cwl/__init__.py b/sdk/cwl/arvados_cwl/__init__.py
index 4584d95..466f73c 100644
--- a/sdk/cwl/arvados_cwl/__init__.py
+++ b/sdk/cwl/arvados_cwl/__init__.py
@@ -89,7 +89,7 @@ class ArvCwlRunner(object):
         self.collection_cache = CollectionCache(self.api, self.keep_client, self.num_retries)
 
         self.work_api = None
-        expected_api = ["jobs", "containers"]
+        expected_api = ["containers", "jobs"]
         for api in expected_api:
             try:
                 methods = self.api._rootDesc.get('resources')[api]['methods']
diff --git a/sdk/cwl/tests/test_job.py b/sdk/cwl/tests/test_job.py
index 5d140ba..89f4677 100644
--- a/sdk/cwl/tests/test_job.py
+++ b/sdk/cwl/tests/test_job.py
@@ -315,7 +315,7 @@ class TestWorkflow(unittest.TestCase):
         api._rootDesc = get_rootDesc()
 
         runner = arvados_cwl.ArvCwlRunner(api)
-        self.assertEqual(runner.work_api, 'jobs')
+        runner.work_api = 'jobs'
 
         list_images_in_arv.return_value = [["zzzzz-4zz18-zzzzzzzzzzzzzzz"]]
         runner.api.collections().get().execute.return_vaulue = {"portable_data_hash": "99999999999999999999999999999993+99"}
diff --git a/sdk/cwl/tests/test_submit.py b/sdk/cwl/tests/test_submit.py
index 15cdc1e..eec37ef 100644
--- a/sdk/cwl/tests/test_submit.py
+++ b/sdk/cwl/tests/test_submit.py
@@ -319,7 +319,7 @@ class TestSubmit(unittest.TestCase):
     def test_submit_runner_ram(self, stubs, tm):
         capture_stdout = cStringIO.StringIO()
         exited = arvados_cwl.main(
-            ["--submit", "--no-wait", "--debug", "--submit-runner-ram=2048",
+            ["--submit", "--no-wait", "--api=jobs", "--debug", "--submit-runner-ram=2048",
              "tests/wf/submit_wf.cwl", "tests/submit_test_job.json"],
             capture_stdout, sys.stderr, api_client=stubs.api)
         self.assertEqual(exited, 0)
@@ -338,7 +338,7 @@ class TestSubmit(unittest.TestCase):
     def test_submit_invalid_runner_ram(self, stubs, tm):
         capture_stdout = cStringIO.StringIO()
         exited = arvados_cwl.main(
-            ["--submit", "--no-wait", "--debug", "--submit-runner-ram=-2048",
+            ["--submit", "--no-wait", "--api=jobs", "--debug", "--submit-runner-ram=-2048",
              "tests/wf/submit_wf.cwl", "tests/submit_test_job.json"],
             capture_stdout, sys.stderr, api_client=stubs.api)
         self.assertEqual(exited, 1)
@@ -350,7 +350,7 @@ class TestSubmit(unittest.TestCase):
 
         capture_stdout = cStringIO.StringIO()
         exited = arvados_cwl.main(
-            ["--submit", "--no-wait", "--debug", "--output-name", output_name,
+            ["--submit", "--no-wait", "--api=jobs", "--debug", "--output-name", output_name,
              "tests/wf/submit_wf.cwl", "tests/submit_test_job.json"],
             capture_stdout, sys.stderr, api_client=stubs.api)
         self.assertEqual(exited, 0)
@@ -369,7 +369,7 @@ class TestSubmit(unittest.TestCase):
     def test_submit_pipeline_name(self, stubs, tm):
         capture_stdout = cStringIO.StringIO()
         exited = arvados_cwl.main(
-            ["--submit", "--no-wait", "--debug", "--name=hello job 123",
+            ["--submit", "--no-wait", "--api=jobs", "--debug", "--name=hello job 123",
              "tests/wf/submit_wf.cwl", "tests/submit_test_job.json"],
             capture_stdout, sys.stderr, api_client=stubs.api)
         self.assertEqual(exited, 0)
@@ -389,7 +389,7 @@ class TestSubmit(unittest.TestCase):
 
         capture_stdout = cStringIO.StringIO()
         exited = arvados_cwl.main(
-            ["--submit", "--no-wait", "--debug", "--output-tags", output_tags,
+            ["--submit", "--no-wait", "--api=jobs", "--debug", "--output-tags", output_tags,
              "tests/wf/submit_wf.cwl", "tests/submit_test_job.json"],
             capture_stdout, sys.stderr, api_client=stubs.api)
         self.assertEqual(exited, 0)
@@ -408,7 +408,7 @@ class TestSubmit(unittest.TestCase):
         project_uuid = 'zzzzz-j7d0g-zzzzzzzzzzzzzzz'
 
         exited = arvados_cwl.main(
-            ["--submit", "--no-wait",
+            ["--submit", "--no-wait", "--api=jobs",
              "--project-uuid", project_uuid,
              "tests/wf/submit_wf.cwl", "tests/submit_test_job.json"],
             sys.stdout, sys.stderr, api_client=stubs.api)
@@ -424,7 +424,7 @@ class TestSubmit(unittest.TestCase):
         capture_stdout = cStringIO.StringIO()
         try:
             exited = arvados_cwl.main(
-                ["--submit", "--no-wait", "--api=containers", "--debug",
+                ["--submit", "--no-wait", "--debug",
                  "tests/wf/submit_wf.cwl", "tests/submit_test_job.json"],
                 capture_stdout, sys.stderr, api_client=stubs.api, keep_client=stubs.keep_client)
             self.assertEqual(exited, 0)
@@ -895,7 +895,7 @@ class TestSubmit(unittest.TestCase):
                          arvados_cwl.runner.arvados_jobs_image(arvrunner, "arvados/jobs:"+arvados_cwl.__version__))
 
 class TestCreateTemplate(unittest.TestCase):
-    existing_template_uuid = "zzzzz-d1hrv-validworkfloyml"
+    existing_template_uuid = "zzzzz-p5p6p-validworkfloyml"
 
     def _adjust_script_params(self, expect_component):
         expect_component['script_parameters']['x'] = {
@@ -1237,7 +1237,7 @@ class TestTemplateInputs(unittest.TestCase):
     @stubs
     def test_inputs_empty(self, stubs):
         exited = arvados_cwl.main(
-            ["--create-template",
+            ["--create-template", "--api=jobs",
              "tests/wf/inputs_test.cwl", "tests/order/empty_order.json"],
             cStringIO.StringIO(), sys.stderr, api_client=stubs.api)
         self.assertEqual(exited, 0)
@@ -1248,7 +1248,7 @@ class TestTemplateInputs(unittest.TestCase):
     @stubs
     def test_inputs(self, stubs):
         exited = arvados_cwl.main(
-            ["--create-template",
+            ["--create-template", "--api=jobs",
              "tests/wf/inputs_test.cwl", "tests/order/inputs_test_order.json"],
             cStringIO.StringIO(), sys.stderr, api_client=stubs.api)
         self.assertEqual(exited, 0)

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