[ARVADOS] updated: b9aef91effaa4ddeb115579cff4c1a47b09b606c
Git user
git at public.curoverse.com
Fri Jan 27 15:37:30 EST 2017
Summary of changes:
.gitignore | 2 +
.../app/assets/javascripts/work_unit_component.js | 22 +-
.../controllers/container_requests_controller.rb | 28 ++
.../controllers/pipeline_instances_controller.rb | 2 +-
.../app/controllers/projects_controller.rb | 10 +-
apps/workbench/app/models/proxy_work_unit.rb | 23 +-
.../application/_extra_tab_line_buttons.html.erb | 0
.../views/application/_title_and_buttons.html.erb | 3 +
.../_extra_tab_line_buttons.html.erb | 10 +
.../app/views/work_units/_show_child.html.erb | 2 +-
.../app/views/work_units/_show_component.html.erb | 2 +-
apps/workbench/config/application.default.yml | 5 +
apps/workbench/config/routes.rb | 1 +
.../container_requests_controller_test.rb | 27 ++
.../test/controllers/projects_controller_test.rb | 9 +-
.../test/diagnostics/container_request_test.rb | 49 ++
apps/workbench/test/diagnostics/pipeline_test.rb | 45 +-
apps/workbench/test/diagnostics_test_helper.rb | 43 ++
apps/workbench/test/integration/projects_test.rb | 8 -
apps/workbench/test/unit/work_unit_test.rb | 12 +-
backports/deb-fuse/fpm-info.sh | 5 +
backports/deb-libfuse-dev/fpm-info.sh | 5 +
backports/python-ciso8601/fpm-info.sh | 3 -
backports/python-llfuse/fpm-info.sh | 9 +-
backports/python-pycrypto/fpm-info.sh | 3 -
backports/python-pycurl/fpm-info.sh | 44 --
build/build.list | 44 ++
build/libcloud-pin | 2 +-
build/package-build-dockerfiles/Makefile | 14 +-
build/package-build-dockerfiles/centos6/Dockerfile | 37 --
.../{debian7 => ubuntu1604}/Dockerfile | 10 +-
build/package-test-dockerfiles/centos6/Dockerfile | 22 -
.../centos6/localrepo.repo | 5 -
build/package-test-dockerfiles/centos7/Dockerfile | 4 +-
build/package-test-dockerfiles/debian7/Dockerfile | 14 -
build/package-test-dockerfiles/debian8/Dockerfile | 7 +-
.../package-test-dockerfiles/ubuntu1204/Dockerfile | 9 +-
.../package-test-dockerfiles/ubuntu1404/Dockerfile | 9 +-
.../package-test-dockerfiles/ubuntu1604/Dockerfile | 20 +
.../ubuntu1604/etc-apt-preferences.d-arvados | 3 +
build/package-testing/deb-common-test-packages.sh | 2 +-
build/package-testing/test-packages-centos6.sh | 1 -
...ages-debian7.sh => test-packages-ubuntu1604.sh} | 0
build/rails-package-scripts/postinst.sh | 6 +-
build/run-build-docker-images.sh | 2 +-
build/run-build-packages-all-targets.sh | 2 +-
build/run-build-packages-one-target.sh | 21 +-
build/run-build-packages-sso.sh | 9 +-
build/run-build-packages.sh | 450 +++++++++---------
build/run-build-test-packages-one-target.sh | 4 +-
build/run-library.sh | 105 ++++-
build/run-tests.sh | 263 ++++++-----
doc/_includes/_install_git.liquid | 8 +-
doc/_includes/_install_postgres_database.liquid | 4 +-
doc/_includes/_install_ruby_and_bundler.liquid | 4 +-
doc/_includes/_navbar_top.liquid | 2 +-
doc/api/methods.html.textile.liquid | 2 +
.../install-compute-node.html.textile.liquid | 9 +-
.../install-compute-node.html.textile.liquid | 9 +-
.../install-crunch-dispatch.html.textile.liquid | 2 +-
doc/install/install-docker.html.textile.liquid | 241 ----------
...nstall-manual-prerequisites.html.textile.liquid | 16 +-
doc/install/install-postgresql.html.textile.liquid | 16 -
.../install-shell-server.html.textile.liquid | 20 +-
.../install-workbench-app.html.textile.liquid | 10 +-
doc/install/install-ws.html.textile.liquid | 204 +++++++++
doc/sdk/cli/reference.html.textile.liquid | 13 +-
doc/sdk/python/sdk-python.html.textile.liquid | 9 +-
doc/user/index.html.textile.liquid | 2 +-
doc/user/topics/arv-copy.html.textile.liquid | 23 +
doc/user/topics/arv-docker.html.textile.liquid | 114 ++---
sdk/cli/bin/crunch-job | 12 +-
sdk/cli/test/test_arv-keep-put.rb | 8 +-
sdk/cwl/arvados_cwl/__init__.py | 155 +++++--
sdk/cwl/arvados_cwl/arvcontainer.py | 83 ++--
sdk/cwl/arvados_cwl/arvdocker.py | 75 +--
sdk/cwl/arvados_cwl/arvjob.py | 65 ++-
sdk/cwl/arvados_cwl/arvworkflow.py | 90 ++--
sdk/cwl/arvados_cwl/crunch_script.py | 24 +-
sdk/cwl/arvados_cwl/done.py | 52 ++-
sdk/cwl/arvados_cwl/fsaccess.py | 31 +-
sdk/cwl/arvados_cwl/pathmapper.py | 37 +-
sdk/cwl/arvados_cwl/runner.py | 250 ++++++----
sdk/cwl/setup.py | 7 +-
sdk/cwl/tests/test_container.py | 21 +-
sdk/cwl/tests/test_job.py | 47 +-
sdk/cwl/tests/test_submit.py | 291 ++++++++----
sdk/cwl/tests/wf/expect_arvworkflow.cwl | 22 +-
sdk/cwl/tests/wf/expect_packed.cwl | 43 +-
sdk/cwl/tests/wf/scatter2_subwf.cwl | 110 +++--
sdk/cwl/tests/wf/submit_wf_packed.cwl | 33 ++
sdk/dev-jobs.dockerfile | 2 +-
sdk/go/arvados/client.go | 97 +++-
sdk/go/arvados/collection.go | 15 +-
sdk/go/arvados/log.go | 25 +
sdk/go/arvados/resource_list.go | 13 +-
sdk/go/arvadosclient/arvadosclient.go | 43 +-
sdk/go/config/dump.go | 25 +
sdk/go/config/load.go | 5 +
sdk/go/crunchrunner/crunchrunner.go | 20 -
sdk/go/ctxlog/log.go | 59 +++
sdk/go/keepclient/block_cache.go | 104 +++++
sdk/go/keepclient/collectionreader.go | 321 +++++--------
sdk/go/keepclient/collectionreader_test.go | 48 +-
sdk/go/keepclient/keepclient.go | 16 +-
sdk/go/keepclient/keepclient_test.go | 31 +-
sdk/go/stats/duration.go | 35 ++
sdk/go/stats/duration_test.go | 23 +
sdk/python/arvados/arvfile.py | 15 +-
sdk/python/arvados/collection.py | 33 +-
sdk/python/arvados/commands/arv_copy.py | 64 ++-
sdk/python/arvados/commands/put.py | 510 ++++++++++++++-------
sdk/python/arvados/commands/run.py | 10 +-
sdk/python/arvados/util.py | 2 +
sdk/python/setup.py | 4 +-
sdk/python/tests/nginx.conf | 16 +
sdk/python/tests/run_test_server.py | 71 ++-
sdk/python/tests/test_arv_put.py | 155 ++++++-
sdk/python/tests/test_arvfile.py | 21 +
sdk/python/tests/test_collections.py | 2 +
sdk/python/tests/test_events.py | 85 ++--
services/api/Gemfile | 5 +
.../api/app/controllers/application_controller.rb | 43 +-
.../arvados/v1/collections_controller.rb | 36 +-
.../controllers/arvados/v1/schema_controller.rb | 10 +-
services/api/app/middlewares/rack_socket.rb | 20 +-
services/api/app/models/arvados_model.rb | 9 +-
services/api/app/models/collection.rb | 100 +++-
services/api/app/models/container.rb | 2 +-
services/api/app/models/container_request.rb | 56 ++-
services/api/app/models/job.rb | 6 +-
services/api/app/models/pipeline_instance.rb | 14 +
services/api/app/models/user.rb | 90 ++--
services/api/config/application.default.yml | 10 +-
services/api/config/application.rb | 17 +
.../api/config/initializers/noop_deep_munge.rb | 9 +
services/api/config/routes.rb | 1 +
.../20161213172944_full_text_search_indexes.rb | 33 ++
...61222153434_split_expiry_to_trash_and_delete.rb | 42 ++
...090712_add_output_name_to_container_requests.rb | 9 +
...tput_name_to_container_request_search_index.rb} | 6 +-
...170105160301_add_output_name_to_cr_fts_index.rb | 22 +
...t_finished_at_on_finished_pipeline_instances.rb | 5 +
services/api/db/structure.sql | 74 ++-
services/api/lib/create_permission_view.sql | 41 ++
services/api/lib/create_superuser_token.rb | 15 +-
services/api/lib/crunch_dispatch.rb | 24 +-
services/api/lib/eventbus.rb | 1 +
services/api/lib/load_param.rb | 3 +-
services/api/lib/sweep_trashed_collections.rb | 34 ++
services/api/test/fixtures/collections.yml | 41 +-
services/api/test/fixtures/jobs.yml | 2 +
.../arvados/v1/collections_controller_test.rb | 102 ++++-
.../arvados/v1/groups_controller_test.rb | 5 +-
.../api/test/functional/arvados/v1/query_test.rb | 29 ++
services/api/test/integration/noop_deep_munge.rb | 35 ++
services/api/test/integration/select_test.rb | 7 +
services/api/test/unit/arvados_model_test.rb | 22 +
services/api/test/unit/collection_test.rb | 140 +++++-
services/api/test/unit/container_request_test.rb | 36 ++
.../api/test/unit/create_superuser_token_test.rb | 21 +-
services/api/test/unit/crunch_dispatch_test.rb | 3 +-
services/api/test/unit/job_test.rb | 18 +
services/api/test/unit/pipeline_instance_test.rb | 8 +
services/api/test/unit/user_test.rb | 10 +-
services/arv-git-httpd/main.go | 5 +
services/arv-web/arv-web.py | 2 +-
.../crunch-dispatch-slurm/crunch-dispatch-slurm.go | 19 +-
services/crunch-run/crunchrun.go | 31 +-
services/crunch-run/crunchrun_test.go | 48 +-
services/crunchstat/crunchstat.go | 36 ++
services/crunchstat/crunchstat_test.go | 150 ++++++
services/fuse/arvados_fuse/__init__.py | 101 ++--
services/fuse/arvados_fuse/command.py | 2 +
services/fuse/tests/mount_test_base.py | 2 +
services/fuse/tests/test_mount.py | 12 +-
services/keep-balance/balance_run_test.go | 9 +-
services/keep-balance/collection.go | 97 ++--
services/keep-balance/collection_test.go | 57 +++
services/keep-balance/keep-balance.service | 2 +-
services/keep-balance/main.go | 12 +-
services/keep-balance/usage.go | 2 +-
services/keep-web/handler.go | 52 +--
services/keep-web/handler_test.go | 43 --
services/keep-web/main.go | 6 +
services/keep-web/ranges_test.go | 90 ++++
services/keepproxy/keepproxy.go | 9 +-
services/keepstore/azure_blob_volume.go | 247 +++++++++-
services/keepstore/azure_blob_volume_test.go | 137 +++++-
services/keepstore/keepstore.go | 8 +-
services/keepstore/logging_router.go | 22 +-
services/keepstore/pipe_adapters.go | 89 ++++
services/keepstore/s3_volume.go | 85 ++--
services/keepstore/stats_ticker.go | 50 ++
services/keepstore/volume.go | 12 +
services/keepstore/volume_unix.go | 247 +++++++---
services/keepstore/volume_unix_test.go | 111 ++++-
.../keepproxy.service => ws/arvados-ws.service} | 6 +-
services/ws/config.go | 40 ++
services/ws/doc.go | 55 +++
services/ws/event.go | 65 +++
services/ws/event_source.go | 216 +++++++++
services/ws/handler.go | 235 ++++++++++
services/ws/main.go | 67 +++
services/ws/permission.go | 94 ++++
services/ws/router.go | 140 ++++++
services/ws/session.go | 33 ++
services/ws/session_v0.go | 295 ++++++++++++
services/ws/session_v1.go | 14 +
tools/arvbox/lib/arvbox/docker/api-setup.sh | 1 +
tools/arvbox/lib/arvbox/docker/common.sh | 9 +-
tools/arvbox/lib/arvbox/docker/createusers.sh | 4 +-
.../lib/arvbox/docker/service/sso/run-service | 1 +
213 files changed, 7230 insertions(+), 2527 deletions(-)
copy tools/crunchstat-summary/tests/__init__.py => apps/workbench/app/views/application/_extra_tab_line_buttons.html.erb (100%)
create mode 100644 apps/workbench/app/views/container_requests/_extra_tab_line_buttons.html.erb
create mode 100644 apps/workbench/test/diagnostics/container_request_test.rb
create mode 100644 backports/deb-fuse/fpm-info.sh
create mode 100644 backports/deb-libfuse-dev/fpm-info.sh
create mode 100644 build/build.list
delete mode 100644 build/package-build-dockerfiles/centos6/Dockerfile
rename build/package-build-dockerfiles/{debian7 => ubuntu1604}/Dockerfile (72%)
delete mode 100644 build/package-test-dockerfiles/centos6/Dockerfile
delete mode 100644 build/package-test-dockerfiles/centos6/localrepo.repo
delete mode 100644 build/package-test-dockerfiles/debian7/Dockerfile
create mode 100644 build/package-test-dockerfiles/ubuntu1604/Dockerfile
create mode 100644 build/package-test-dockerfiles/ubuntu1604/etc-apt-preferences.d-arvados
delete mode 120000 build/package-testing/test-packages-centos6.sh
rename build/package-testing/{test-packages-debian7.sh => test-packages-ubuntu1604.sh} (100%)
delete mode 100644 doc/install/install-docker.html.textile.liquid
create mode 100644 doc/install/install-ws.html.textile.liquid
create mode 100644 sdk/cwl/tests/wf/submit_wf_packed.cwl
create mode 100644 sdk/go/arvados/log.go
create mode 100644 sdk/go/config/dump.go
create mode 100644 sdk/go/ctxlog/log.go
create mode 100644 sdk/go/keepclient/block_cache.go
create mode 100644 sdk/go/stats/duration.go
create mode 100644 sdk/go/stats/duration_test.go
create mode 100644 services/api/config/initializers/noop_deep_munge.rb
create mode 100644 services/api/db/migrate/20161213172944_full_text_search_indexes.rb
create mode 100644 services/api/db/migrate/20161222153434_split_expiry_to_trash_and_delete.rb
create mode 100644 services/api/db/migrate/20161223090712_add_output_name_to_container_requests.rb
copy services/api/db/migrate/{20161115174218_add_output_and_log_uuids_to_container_request_search_index.rb => 20170102153111_add_output_name_to_container_request_search_index.rb} (87%)
create mode 100644 services/api/db/migrate/20170105160301_add_output_name_to_cr_fts_index.rb
create mode 100644 services/api/db/migrate/20170105160302_set_finished_at_on_finished_pipeline_instances.rb
create mode 100644 services/api/lib/create_permission_view.sql
create mode 100644 services/api/lib/sweep_trashed_collections.rb
create mode 100644 services/api/test/integration/noop_deep_munge.rb
create mode 100644 services/keep-balance/collection_test.go
create mode 100644 services/keep-web/ranges_test.go
create mode 100644 services/keepstore/pipe_adapters.go
create mode 100644 services/keepstore/stats_ticker.go
copy services/{keepproxy/keepproxy.service => ws/arvados-ws.service} (55%)
create mode 100644 services/ws/config.go
create mode 100644 services/ws/doc.go
create mode 100644 services/ws/event.go
create mode 100644 services/ws/event_source.go
create mode 100644 services/ws/handler.go
create mode 100644 services/ws/main.go
create mode 100644 services/ws/permission.go
create mode 100644 services/ws/router.go
create mode 100644 services/ws/session.go
create mode 100644 services/ws/session_v0.go
create mode 100644 services/ws/session_v1.go
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commit b9aef91effaa4ddeb115579cff4c1a47b09b606c
Author: Tom Clegg <tom at curoverse.com>
Date: Fri Jan 27 15:28:36 2017 -0500
10690: De-duplicate dumpConfig.
diff --git a/sdk/go/config/dump.go b/sdk/go/config/dump.go
new file mode 100644
index 0000000..30dbb8a
--- /dev/null
+++ b/sdk/go/config/dump.go
@@ -0,0 +1,25 @@
+package config
+
+import (
+ "os"
+
+ "github.com/ghodss/yaml"
+)
+
+// DumpAndExit writes the given config to stdout as YAML. If an error
+// occurs, that error is returned. Otherwise, the program exits 0.
+//
+// Example:
+//
+// log.Fatal(DumpAndExit(cfg))
+func DumpAndExit(cfg interface{}) error {
+ y, err := yaml.Marshal(cfg)
+ if err != nil {
+ return err
+ }
+ _, err = os.Stdout.Write(y)
+ if err != nil {
+ return err
+ }
+ os.Exit(0)
+}
diff --git a/services/arv-git-httpd/main.go b/services/arv-git-httpd/main.go
index 3ff1557..5b6ae61 100644
--- a/services/arv-git-httpd/main.go
+++ b/services/arv-git-httpd/main.go
@@ -10,7 +10,6 @@ import (
"git.curoverse.com/arvados.git/sdk/go/arvados"
"git.curoverse.com/arvados.git/sdk/go/config"
"github.com/coreos/go-systemd/daemon"
- "github.com/ghodss/yaml"
)
// Server configuration
@@ -66,12 +65,7 @@ func main() {
}
if *dumpConfig {
- y, err := yaml.Marshal(theConfig)
- if err != nil {
- log.Fatal(err)
- }
- os.Stdout.Write(y)
- os.Exit(0)
+ log.Fatal(config.DumpAndExit(theConfig))
}
srv := &server{}
diff --git a/services/crunch-dispatch-slurm/crunch-dispatch-slurm.go b/services/crunch-dispatch-slurm/crunch-dispatch-slurm.go
index b62b24b..f1f5d1e 100644
--- a/services/crunch-dispatch-slurm/crunch-dispatch-slurm.go
+++ b/services/crunch-dispatch-slurm/crunch-dispatch-slurm.go
@@ -19,7 +19,6 @@ import (
"git.curoverse.com/arvados.git/sdk/go/config"
"git.curoverse.com/arvados.git/sdk/go/dispatch"
"github.com/coreos/go-systemd/daemon"
- "github.com/ghodss/yaml"
)
// Config used by crunch-dispatch-slurm
@@ -96,12 +95,7 @@ func doMain() error {
}
if *dumpConfig {
- y, err := yaml.Marshal(theConfig)
- if err != nil {
- log.Fatal(err)
- }
- os.Stdout.Write(y)
- os.Exit(0)
+ log.Fatal(config.DumpAndExit(theConfig))
}
arv, err := arvadosclient.MakeArvadosClient()
diff --git a/services/keep-balance/main.go b/services/keep-balance/main.go
index 926a0f2..7d734cf 100644
--- a/services/keep-balance/main.go
+++ b/services/keep-balance/main.go
@@ -11,7 +11,6 @@ import (
"git.curoverse.com/arvados.git/sdk/go/arvados"
"git.curoverse.com/arvados.git/sdk/go/config"
- "github.com/ghodss/yaml"
)
const defaultConfigPath = "/etc/arvados/keep-balance/keep-balance.yml"
@@ -91,12 +90,7 @@ func main() {
}
if *dumpConfig {
- y, err := yaml.Marshal(config)
- if err != nil {
- log.Fatal(err)
- }
- os.Stdout.Write(y)
- os.Exit(0)
+ log.Fatal(config.DumpAndExit(theConfig))
}
if *debugFlag {
diff --git a/services/keep-web/main.go b/services/keep-web/main.go
index cd55355..5f4cb50 100644
--- a/services/keep-web/main.go
+++ b/services/keep-web/main.go
@@ -8,7 +8,6 @@ import (
"git.curoverse.com/arvados.git/sdk/go/arvados"
"git.curoverse.com/arvados.git/sdk/go/config"
"github.com/coreos/go-systemd/daemon"
- "github.com/ghodss/yaml"
)
var (
@@ -82,12 +81,7 @@ func main() {
}
if *dumpConfig {
- y, err := yaml.Marshal(cfg)
- if err != nil {
- log.Fatal(err)
- }
- os.Stdout.Write(y)
- os.Exit(0)
+ log.Fatal(config.DumpAndExit(cfg))
}
os.Setenv("ARVADOS_API_HOST", cfg.Client.APIHost)
diff --git a/services/keepproxy/keepproxy.go b/services/keepproxy/keepproxy.go
index f159070..33f35e5 100644
--- a/services/keepproxy/keepproxy.go
+++ b/services/keepproxy/keepproxy.go
@@ -85,12 +85,7 @@ func main() {
}
if *dumpConfig {
- y, err := yaml.Marshal(cfg)
- if err != nil {
- log.Fatal(err)
- }
- os.Stdout.Write(y)
- os.Exit(0)
+ log.Fatal(config.DumpAndExit(cfg))
}
arv, err := arvadosclient.New(&cfg.Client)
diff --git a/services/keepstore/keepstore.go b/services/keepstore/keepstore.go
index 5414795..9033de8 100644
--- a/services/keepstore/keepstore.go
+++ b/services/keepstore/keepstore.go
@@ -16,7 +16,6 @@ import (
"git.curoverse.com/arvados.git/sdk/go/keepclient"
log "github.com/Sirupsen/logrus"
"github.com/coreos/go-systemd/daemon"
- "github.com/ghodss/yaml"
)
// A Keep "block" is 64MB.
@@ -105,12 +104,7 @@ func main() {
}
if *dumpConfig {
- y, err := yaml.Marshal(theConfig)
- if err != nil {
- log.Fatal(err)
- }
- os.Stdout.Write(y)
- os.Exit(0)
+ log.Fatal(config.DumpAndExit(theConfig))
}
err = theConfig.Start()
commit a61bee32ac9641c957593b9b25a763f3e95d8da1
Author: Tom Clegg <tom at curoverse.com>
Date: Thu Jan 12 10:33:16 2017 -0500
10690: Add -dump-config to arv-git-httpd, crunch-dispatch-slurm, keep-balance, keep-web, keepproxy.
diff --git a/services/arv-git-httpd/main.go b/services/arv-git-httpd/main.go
index 75645ff..3ff1557 100644
--- a/services/arv-git-httpd/main.go
+++ b/services/arv-git-httpd/main.go
@@ -10,6 +10,7 @@ import (
"git.curoverse.com/arvados.git/sdk/go/arvados"
"git.curoverse.com/arvados.git/sdk/go/config"
"github.com/coreos/go-systemd/daemon"
+ "github.com/ghodss/yaml"
)
// Server configuration
@@ -44,6 +45,7 @@ func main() {
"Value for GITOLITE_HTTP_HOME environment variable. If not empty, GL_BYPASS_ACCESS_CHECKS=1 will also be set."+deprecated)
cfgPath := flag.String("config", defaultCfgPath, "Configuration file `path`.")
+ dumpConfig := flag.Bool("dump-config", false, "write current configuration to stdout and exit (useful for migrating from command line flags to config file)")
flag.Usage = usage
flag.Parse()
@@ -63,6 +65,15 @@ func main() {
}
}
+ if *dumpConfig {
+ y, err := yaml.Marshal(theConfig)
+ if err != nil {
+ log.Fatal(err)
+ }
+ os.Stdout.Write(y)
+ os.Exit(0)
+ }
+
srv := &server{}
if err := srv.Start(); err != nil {
log.Fatal(err)
diff --git a/services/crunch-dispatch-slurm/crunch-dispatch-slurm.go b/services/crunch-dispatch-slurm/crunch-dispatch-slurm.go
index e768b50..b62b24b 100644
--- a/services/crunch-dispatch-slurm/crunch-dispatch-slurm.go
+++ b/services/crunch-dispatch-slurm/crunch-dispatch-slurm.go
@@ -5,11 +5,6 @@ package main
import (
"flag"
"fmt"
- "git.curoverse.com/arvados.git/sdk/go/arvados"
- "git.curoverse.com/arvados.git/sdk/go/arvadosclient"
- "git.curoverse.com/arvados.git/sdk/go/config"
- "git.curoverse.com/arvados.git/sdk/go/dispatch"
- "github.com/coreos/go-systemd/daemon"
"io"
"io/ioutil"
"log"
@@ -18,6 +13,13 @@ import (
"os/exec"
"strings"
"time"
+
+ "git.curoverse.com/arvados.git/sdk/go/arvados"
+ "git.curoverse.com/arvados.git/sdk/go/arvadosclient"
+ "git.curoverse.com/arvados.git/sdk/go/config"
+ "git.curoverse.com/arvados.git/sdk/go/dispatch"
+ "github.com/coreos/go-systemd/daemon"
+ "github.com/ghodss/yaml"
)
// Config used by crunch-dispatch-slurm
@@ -56,6 +58,10 @@ func doMain() error {
"config",
defaultConfigPath,
"`path` to JSON or YAML configuration file")
+ dumpConfig := flag.Bool(
+ "dump-config",
+ false,
+ "write current configuration to stdout and exit")
// Parse args; omit the first arg which is the command name
flags.Parse(os.Args[1:])
@@ -89,6 +95,15 @@ func doMain() error {
log.Printf("warning: Client credentials missing from config, so falling back on environment variables (deprecated).")
}
+ if *dumpConfig {
+ y, err := yaml.Marshal(theConfig)
+ if err != nil {
+ log.Fatal(err)
+ }
+ os.Stdout.Write(y)
+ os.Exit(0)
+ }
+
arv, err := arvadosclient.MakeArvadosClient()
if err != nil {
log.Printf("Error making Arvados client: %v", err)
diff --git a/services/keep-balance/main.go b/services/keep-balance/main.go
index 310c77a..926a0f2 100644
--- a/services/keep-balance/main.go
+++ b/services/keep-balance/main.go
@@ -11,6 +11,7 @@ import (
"git.curoverse.com/arvados.git/sdk/go/arvados"
"git.curoverse.com/arvados.git/sdk/go/config"
+ "github.com/ghodss/yaml"
)
const defaultConfigPath = "/etc/arvados/keep-balance/keep-balance.yml"
@@ -78,6 +79,7 @@ func main() {
"send pull requests (make more replicas of blocks that are underreplicated or are not in optimal rendezvous probe order)")
flag.BoolVar(&runOptions.CommitTrash, "commit-trash", false,
"send trash requests (delete unreferenced old blocks, and excess replicas of overreplicated blocks)")
+ dumpConfig := flag.Bool("dump-config", false, "write current configuration to stdout and exit")
dumpFlag := flag.Bool("dump", false, "dump details for each block to stdout")
debugFlag := flag.Bool("debug", false, "enable debug messages")
flag.Usage = usage
@@ -88,6 +90,15 @@ func main() {
mustReadConfig(&config.KeepServiceList, *serviceListPath)
}
+ if *dumpConfig {
+ y, err := yaml.Marshal(config)
+ if err != nil {
+ log.Fatal(err)
+ }
+ os.Stdout.Write(y)
+ os.Exit(0)
+ }
+
if *debugFlag {
debugf = log.Printf
if j, err := json.Marshal(config); err != nil {
diff --git a/services/keep-web/main.go b/services/keep-web/main.go
index df8a0b5..cd55355 100644
--- a/services/keep-web/main.go
+++ b/services/keep-web/main.go
@@ -8,6 +8,7 @@ import (
"git.curoverse.com/arvados.git/sdk/go/arvados"
"git.curoverse.com/arvados.git/sdk/go/config"
"github.com/coreos/go-systemd/daemon"
+ "github.com/ghodss/yaml"
)
var (
@@ -62,6 +63,8 @@ func main() {
"Only serve attachments at the given `host:port`"+deprecated)
flag.BoolVar(&cfg.TrustAllContent, "trust-all-content", false,
"Serve non-public content from a single origin. Dangerous: read docs before using!"+deprecated)
+ dumpConfig := flag.Bool("dump-config", false,
+ "write current configuration to stdout and exit")
flag.Usage = usage
flag.Parse()
@@ -78,6 +81,15 @@ func main() {
cfg.AnonymousTokens = []string{os.Getenv("ARVADOS_API_TOKEN")}
}
+ if *dumpConfig {
+ y, err := yaml.Marshal(cfg)
+ if err != nil {
+ log.Fatal(err)
+ }
+ os.Stdout.Write(y)
+ os.Exit(0)
+ }
+
os.Setenv("ARVADOS_API_HOST", cfg.Client.APIHost)
srv := &server{Config: cfg}
if err := srv.Start(); err != nil {
diff --git a/services/keepproxy/keepproxy.go b/services/keepproxy/keepproxy.go
index 24df531..f159070 100644
--- a/services/keepproxy/keepproxy.go
+++ b/services/keepproxy/keepproxy.go
@@ -1,7 +1,6 @@
package main
import (
- "encoding/json"
"errors"
"flag"
"fmt"
@@ -22,6 +21,7 @@ import (
"git.curoverse.com/arvados.git/sdk/go/config"
"git.curoverse.com/arvados.git/sdk/go/keepclient"
"github.com/coreos/go-systemd/daemon"
+ "github.com/ghodss/yaml"
"github.com/gorilla/mux"
)
@@ -62,6 +62,7 @@ func main() {
var cfgPath string
const defaultCfgPath = "/etc/arvados/keepproxy/keepproxy.yml"
flagset.StringVar(&cfgPath, "config", defaultCfgPath, "Configuration file `path`")
+ dumpConfig := flagset.Bool("dump-config", false, "write current configuration to stdout and exit")
flagset.Parse(os.Args[1:])
err := config.LoadFile(cfg, cfgPath)
@@ -77,12 +78,21 @@ func main() {
if regexp.MustCompile("^(?i:1|yes|true)$").MatchString(os.Getenv("ARVADOS_API_HOST_INSECURE")) {
cfg.Client.Insecure = true
}
- if j, err := json.MarshalIndent(cfg, "", " "); err == nil {
+ if y, err := yaml.Marshal(cfg); err == nil && !*dumpConfig {
log.Print("Current configuration:\n", string(j))
}
cfg.Timeout = arvados.Duration(time.Duration(*timeoutSeconds) * time.Second)
}
+ if *dumpConfig {
+ y, err := yaml.Marshal(cfg)
+ if err != nil {
+ log.Fatal(err)
+ }
+ os.Stdout.Write(y)
+ os.Exit(0)
+ }
+
arv, err := arvadosclient.New(&cfg.Client)
if err != nil {
log.Fatalf("Error setting up arvados client %s", err.Error())
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