[ARVADOS] updated: 495a7df016f63ae348000b1c046f8e1c5f1c5903

[Git user]

Summary of changes:
 sdk/cwl/arvados_cwl/__init__.py      | 22 ++++++-------
 sdk/cwl/arvados_cwl/arvcontainer.py  |  8 +++--
 sdk/cwl/arvados_cwl/arvjob.py        |  6 ++--
 sdk/cwl/arvados_cwl/crunch_script.py |  8 ++++-
 sdk/cwl/arvados_cwl/runner.py        |  3 +-
 sdk/cwl/setup.py                     |  2 +-
 sdk/cwl/tests/test_submit.py         | 61 +++++++++++++++++++++++++++++++-----
 7 files changed, 84 insertions(+), 26 deletions(-)

       via  495a7df016f63ae348000b1c046f8e1c5f1c5903 (commit)
       via  83a0c3c06e3d6c58da44cd433573b732c59f3beb (commit)
       via  4695df7994cc54765681ac1f97111dbc065fadaf (commit)
       via  e33f8c3fe2bd7b9d4d4f63540d38cd9732b7f854 (commit)
       via  74e9a4dd2edc0b17d08d9b5ac8c7293dd9e93503 (commit)
       via  5f8e65c488277b3f259f791d1cd17361bd67009d (commit)
      from  84968bdae36586c875a50cc82662de84a5118dfa (commit)

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commit 495a7df016f63ae348000b1c046f8e1c5f1c5903
Merge: 84968bd 83a0c3c
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date:   Fri Jan 6 13:41:11 2017 -0500

    Merge branch '10793-cwl-continue-on-error' closes #10793

diff --cc sdk/cwl/tests/test_submit.py
index 14ae7b9,0ee90c8..0a01fb4
--- a/sdk/cwl/tests/test_submit.py
+++ b/sdk/cwl/tests/test_submit.py
@@@ -470,9 -515,8 +515,9 @@@ class TestSubmit(unittest.TestCase)
              logging.exception("")
  
          stubs.expect_container_spec["command"] = ['arvados-cwl-runner', '--local', '--api=containers', '--no-log-timestamps',
-                                                   "--output-name="+output_name, '--enable-reuse',
+                                                   "--output-name="+output_name, '--enable-reuse', '--on-error=continue',
                                                    '/var/lib/cwl/workflow/submit_wf.cwl', '/var/lib/cwl/cwl.input.json']
 +        stubs.expect_container_spec["output_name"] = output_name
  
          expect_container = copy.deepcopy(stubs.expect_container_spec)
          stubs.api.container_requests().create.assert_called_with(

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