[ARVADOS] updated: bb91f86ea02e3535e3953ee0916dd6877bf585f7
Git user
git at public.curoverse.com
Tue Aug 29 16:22:23 EDT 2017
Summary of changes:
.gitignore | 1 +
.../app/controllers/collections_controller.rb | 123 +-----
.../app/controllers/healthcheck_controller.rb | 2 +-
apps/workbench/app/views/jobs/_show_log.html.erb | 2 +-
apps/workbench/config/application.default.yml | 9 +-
apps/workbench/config/application.yml.example | 8 +
apps/workbench/config/load_config.rb | 14 +-
.../controllers/collections_controller_test.rb | 100 ++---
.../controllers/healthcheck_controller_test.rb | 2 +-
.../test/integration/anonymous_access_test.rb | 10 +-
.../workbench/test/integration/collections_test.rb | 28 +-
apps/workbench/test/integration/jobs_test.rb | 40 +-
apps/workbench/test/integration_helper.rb | 17 +-
build/build.list | 5 +-
build/run-build-docker-images.sh | 4 +
build/run-build-packages.sh | 2 +
build/run-library.sh | 18 +-
build/run-tests.sh | 11 +-
lib/crunchstat/crunchstat.go | 10 +-
lib/crunchstat/crunchstat_test.go | 2 +-
sdk/cli/bin/crunch-job | 40 +-
sdk/cwl/arvados_cwl/__init__.py | 1 +
sdk/cwl/arvados_cwl/arvcontainer.py | 3 +
sdk/cwl/arvados_cwl/arvdocker.py | 7 +-
sdk/cwl/arvados_cwl/arvtool.py | 2 +-
sdk/cwl/arvados_cwl/fsaccess.py | 3 +
sdk/cwl/arvados_cwl/pathmapper.py | 10 +
sdk/cwl/arvados_cwl/runner.py | 2 +
sdk/cwl/setup.py | 4 +-
sdk/cwl/tests/test_submit.py | 39 +-
sdk/cwl/tests/wf/expect_packed.cwl | 2 +-
sdk/cwl/tests/wf/scatter2_subwf.cwl | 1 +
sdk/go/arvados/container.go | 2 +-
sdk/go/arvados/error.go | 2 +-
sdk/go/health/handler.go | 2 +-
sdk/perl/lib/Arvados/Request.pm | 5 +-
sdk/python/arvados/commands/put.py | 1 +
sdk/python/arvados/commands/ws.py | 8 +-
sdk/python/arvados/util.py | 2 +
sdk/python/tests/test_arv_put.py | 56 ++-
services/api/Gemfile.lock | 22 +-
.../arvados/v1/healthcheck_controller.rb | 2 +-
services/api/config/application.default.yml | 2 +-
.../arvados/v1/healthcheck_controller_test.rb | 2 +-
services/fuse/arvados_fuse/__init__.py | 33 +-
services/fuse/arvados_fuse/command.py | 16 +-
services/fuse/arvados_fuse/fresh.py | 3 +
services/fuse/arvados_fuse/fusedir.py | 133 ++++--
services/fuse/tests/test_mount.py | 106 +++--
services/keep-web/handler.go | 1 +
services/keepstore/s3_volume.go | 2 +-
services/nodemanager/arvnodeman/baseactor.py | 8 +-
.../arvnodeman/computenode/dispatch/__init__.py | 6 +
.../arvnodeman/computenode/dispatch/slurm.py | 2 +-
services/nodemanager/arvnodeman/config.py | 3 +-
services/nodemanager/arvnodeman/jobqueue.py | 52 ++-
services/nodemanager/arvnodeman/status.py | 22 +
services/nodemanager/arvnodeman/timedcallback.py | 8 +-
services/nodemanager/setup.py | 2 +-
services/nodemanager/tests/integration_test.py | 51 ++-
services/nodemanager/tests/stress_test.cwl | 51 +++
.../nodemanager/tests/test_computenode_dispatch.py | 13 +-
.../tests/test_computenode_dispatch_slurm.py | 25 +-
services/nodemanager/tests/test_daemon.py | 102 +++--
services/nodemanager/tests/test_failure.py | 35 +-
services/nodemanager/tests/test_jobqueue.py | 102 +++--
services/nodemanager/tests/test_status.py | 40 ++
services/nodemanager/tests/test_timedcallback.py | 37 +-
services/nodemanager/tests/testutil.py | 11 +-
services/ws/event_source.go | 3 +-
services/ws/handler.go | 20 +-
services/ws/session_v0.go | 23 ++
services/ws/session_v0_test.go | 23 +-
tools/arvbox/lib/arvbox/docker/Dockerfile.base | 14 +-
.../crunchstat_summary/command.py | 16 +-
.../crunchstat_summary/reader.py | 12 +-
.../crunchstat_summary/summarizer.py | 454 ++++++++++++++-------
...r_9tee4-dz642-mjfb0i5hzojp16a-crunchstat.txt.gz | Bin 0 -> 622 bytes
...-dz642-mjfb0i5hzojp16a-crunchstat.txt.gz.report | 23 ++
tools/crunchstat-summary/tests/test_examples.py | 32 ++
vendor/vendor.json | 19 +-
81 files changed, 1373 insertions(+), 758 deletions(-)
create mode 100644 services/nodemanager/tests/stress_test.cwl
create mode 100644 tools/crunchstat-summary/tests/container_9tee4-dz642-mjfb0i5hzojp16a-crunchstat.txt.gz
create mode 100644 tools/crunchstat-summary/tests/container_9tee4-dz642-mjfb0i5hzojp16a-crunchstat.txt.gz.report
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Those revisions listed above that are new to this repository have
not appeared on any other notification email; so we list those
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commit bb91f86ea02e3535e3953ee0916dd6877bf585f7
Merge: b459e0f dc48034
Author: Tom Clegg <tclegg at veritasgenetics.com>
Date: Tue Aug 29 01:30:11 2017 -0400
Merge branch 'master' into 11898-no-distinct
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg at veritasgenetics.com>
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