[ARVADOS] updated: bb91f86ea02e3535e3953ee0916dd6877bf585f7

Git user git at public.curoverse.com
Tue Aug 29 16:22:23 EDT 2017


Summary of changes:
 .gitignore                                         |   1 +
 .../app/controllers/collections_controller.rb      | 123 +-----
 .../app/controllers/healthcheck_controller.rb      |   2 +-
 apps/workbench/app/views/jobs/_show_log.html.erb   |   2 +-
 apps/workbench/config/application.default.yml      |   9 +-
 apps/workbench/config/application.yml.example      |   8 +
 apps/workbench/config/load_config.rb               |  14 +-
 .../controllers/collections_controller_test.rb     | 100 ++---
 .../controllers/healthcheck_controller_test.rb     |   2 +-
 .../test/integration/anonymous_access_test.rb      |  10 +-
 .../workbench/test/integration/collections_test.rb |  28 +-
 apps/workbench/test/integration/jobs_test.rb       |  40 +-
 apps/workbench/test/integration_helper.rb          |  17 +-
 build/build.list                                   |   5 +-
 build/run-build-docker-images.sh                   |   4 +
 build/run-build-packages.sh                        |   2 +
 build/run-library.sh                               |  18 +-
 build/run-tests.sh                                 |  11 +-
 lib/crunchstat/crunchstat.go                       |  10 +-
 lib/crunchstat/crunchstat_test.go                  |   2 +-
 sdk/cli/bin/crunch-job                             |  40 +-
 sdk/cwl/arvados_cwl/__init__.py                    |   1 +
 sdk/cwl/arvados_cwl/arvcontainer.py                |   3 +
 sdk/cwl/arvados_cwl/arvdocker.py                   |   7 +-
 sdk/cwl/arvados_cwl/arvtool.py                     |   2 +-
 sdk/cwl/arvados_cwl/fsaccess.py                    |   3 +
 sdk/cwl/arvados_cwl/pathmapper.py                  |  10 +
 sdk/cwl/arvados_cwl/runner.py                      |   2 +
 sdk/cwl/setup.py                                   |   4 +-
 sdk/cwl/tests/test_submit.py                       |  39 +-
 sdk/cwl/tests/wf/expect_packed.cwl                 |   2 +-
 sdk/cwl/tests/wf/scatter2_subwf.cwl                |   1 +
 sdk/go/arvados/container.go                        |   2 +-
 sdk/go/arvados/error.go                            |   2 +-
 sdk/go/health/handler.go                           |   2 +-
 sdk/perl/lib/Arvados/Request.pm                    |   5 +-
 sdk/python/arvados/commands/put.py                 |   1 +
 sdk/python/arvados/commands/ws.py                  |   8 +-
 sdk/python/arvados/util.py                         |   2 +
 sdk/python/tests/test_arv_put.py                   |  56 ++-
 services/api/Gemfile.lock                          |  22 +-
 .../arvados/v1/healthcheck_controller.rb           |   2 +-
 services/api/config/application.default.yml        |   2 +-
 .../arvados/v1/healthcheck_controller_test.rb      |   2 +-
 services/fuse/arvados_fuse/__init__.py             |  33 +-
 services/fuse/arvados_fuse/command.py              |  16 +-
 services/fuse/arvados_fuse/fresh.py                |   3 +
 services/fuse/arvados_fuse/fusedir.py              | 133 ++++--
 services/fuse/tests/test_mount.py                  | 106 +++--
 services/keep-web/handler.go                       |   1 +
 services/keepstore/s3_volume.go                    |   2 +-
 services/nodemanager/arvnodeman/baseactor.py       |   8 +-
 .../arvnodeman/computenode/dispatch/__init__.py    |   6 +
 .../arvnodeman/computenode/dispatch/slurm.py       |   2 +-
 services/nodemanager/arvnodeman/config.py          |   3 +-
 services/nodemanager/arvnodeman/jobqueue.py        |  52 ++-
 services/nodemanager/arvnodeman/status.py          |  22 +
 services/nodemanager/arvnodeman/timedcallback.py   |   8 +-
 services/nodemanager/setup.py                      |   2 +-
 services/nodemanager/tests/integration_test.py     |  51 ++-
 services/nodemanager/tests/stress_test.cwl         |  51 +++
 .../nodemanager/tests/test_computenode_dispatch.py |  13 +-
 .../tests/test_computenode_dispatch_slurm.py       |  25 +-
 services/nodemanager/tests/test_daemon.py          | 102 +++--
 services/nodemanager/tests/test_failure.py         |  35 +-
 services/nodemanager/tests/test_jobqueue.py        | 102 +++--
 services/nodemanager/tests/test_status.py          |  40 ++
 services/nodemanager/tests/test_timedcallback.py   |  37 +-
 services/nodemanager/tests/testutil.py             |  11 +-
 services/ws/event_source.go                        |   3 +-
 services/ws/handler.go                             |  20 +-
 services/ws/session_v0.go                          |  23 ++
 services/ws/session_v0_test.go                     |  23 +-
 tools/arvbox/lib/arvbox/docker/Dockerfile.base     |  14 +-
 .../crunchstat_summary/command.py                  |  16 +-
 .../crunchstat_summary/reader.py                   |  12 +-
 .../crunchstat_summary/summarizer.py               | 454 ++++++++++++++-------
 ...r_9tee4-dz642-mjfb0i5hzojp16a-crunchstat.txt.gz | Bin 0 -> 622 bytes
 ...-dz642-mjfb0i5hzojp16a-crunchstat.txt.gz.report |  23 ++
 tools/crunchstat-summary/tests/test_examples.py    |  32 ++
 vendor/vendor.json                                 |  19 +-
 81 files changed, 1373 insertions(+), 758 deletions(-)
 create mode 100644 services/nodemanager/tests/stress_test.cwl
 create mode 100644 tools/crunchstat-summary/tests/container_9tee4-dz642-mjfb0i5hzojp16a-crunchstat.txt.gz
 create mode 100644 tools/crunchstat-summary/tests/container_9tee4-dz642-mjfb0i5hzojp16a-crunchstat.txt.gz.report

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commit bb91f86ea02e3535e3953ee0916dd6877bf585f7
Merge: b459e0f dc48034
Author: Tom Clegg <tclegg at veritasgenetics.com>
Date:   Tue Aug 29 01:30:11 2017 -0400

    Merge branch 'master' into 11898-no-distinct
    
    Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg at veritasgenetics.com>


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