[ARVADOS] updated: 921d4321201be7542f9198202f75ba39c3f83d3f
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git at public.curoverse.com
Thu Apr 6 15:45:46 EDT 2017
Summary of changes:
sdk/cwl/arvados_cwl/pathmapper.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
via 921d4321201be7542f9198202f75ba39c3f83d3f (commit)
from 7ce46899b5ed250aa909fa240b6be3e01637fb79 (commit)
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commit 921d4321201be7542f9198202f75ba39c3f83d3f
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date: Thu Apr 6 15:43:38 2017 -0400
11423: Restore check to use pdh_path because it is only supposed to match Files
references.
diff --git a/sdk/cwl/arvados_cwl/pathmapper.py b/sdk/cwl/arvados_cwl/pathmapper.py
index 7884614..713162f 100644
--- a/sdk/cwl/arvados_cwl/pathmapper.py
+++ b/sdk/cwl/arvados_cwl/pathmapper.py
@@ -33,7 +33,7 @@ class ArvPathMapper(PathMapper):
if srcobj["class"] == "File":
if "#" in src:
src = src[:src.index("#")]
- if isinstance(src, basestring) and ArvPathMapper.pdh_dirpath.match(src):
+ if isinstance(src, basestring) and ArvPathMapper.pdh_path.match(src):
self._pathmap[src] = MapperEnt(src, self.collection_pattern % src[5:], "File")
if src not in self._pathmap:
# Local FS ref, may need to be uploaded or may be on keep
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