[ARVADOS] updated: 38fcd08dda022d0167840fbb65222fe99b75fcf5
Git user
git at public.curoverse.com
Thu Apr 6 15:15:52 EDT 2017
Summary of changes:
.../app/controllers/actions_controller.rb | 37 +---
.../app/controllers/application_controller.rb | 43 ++++
.../app/controllers/collections_controller.rb | 52 +++++
apps/workbench/app/helpers/application_helper.rb | 4 +-
apps/workbench/app/models/collection.rb | 2 +-
.../app/views/collections/_show_files.html.erb | 30 ++-
apps/workbench/config/routes.rb | 1 +
.../controllers/collections_controller_test.rb | 132 +++++++++++-
.../workbench/test/integration/collections_test.rb | 59 ++++++
build/build.list | 4 +-
.../package-test-dockerfiles/ubuntu1204/Dockerfile | 2 +-
doc/_config.yml | 1 +
.../methods/container_requests.html.textile.liquid | 2 +
.../install-dispatch.html.textile.liquid | 15 ++
doc/install/install-api-server.html.textile.liquid | 86 ++------
doc/install/install-ws.html.textile.liquid | 12 +-
docker/migrate-docker19/dnd.sh | 14 +-
docker/migrate-docker19/migrate.sh | 39 +++-
sdk/cli/arvados-cli.gemspec | 2 +-
sdk/cwl/arvados_cwl/__init__.py | 3 +
sdk/cwl/arvados_cwl/fsaccess.py | 2 +
sdk/cwl/arvados_cwl/runner.py | 3 -
sdk/cwl/setup.py | 5 +-
sdk/cwl/tests/test_submit.py | 16 +-
sdk/go/keepclient/support.go | 10 +
sdk/python/arvados/api.py | 5 +-
sdk/python/arvados/cache.py | 71 +++++++
sdk/python/arvados/commands/migrate19.py | 34 ++-
sdk/python/arvados/commands/run.py | 88 +++++---
sdk/python/setup.py | 2 +-
sdk/python/tests/run_test_server.py | 5 +-
sdk/python/tests/test_cache.py | 95 +++++++++
sdk/ruby/arvados.gemspec | 2 +-
services/api/Rakefile | 10 +
.../api/app/controllers/application_controller.rb | 46 +---
.../app/controllers/arvados/v1/nodes_controller.rb | 10 +-
services/api/app/models/arvados_model.rb | 104 ++++++---
services/api/app/models/collection.rb | 42 ++--
services/api/app/models/container.rb | 93 +++++++-
services/api/app/models/container_request.rb | 234 ++++++---------------
services/api/app/models/log.rb | 4 +-
services/api/config/application.default.yml | 18 ++
..._add_portable_data_hash_index_to_collections.rb | 5 +
...0012505_add_output_ttl_to_container_requests.rb | 5 +
services/api/db/structure.sql | 16 +-
services/api/lib/audit_logs.rb | 65 ++++++
services/api/lib/crunch_dispatch.rb | 7 +-
services/api/test/fixtures/collections.yml | 16 +-
services/api/test/fixtures/logs.yml | 4 +
.../functional/arvados/v1/nodes_controller_test.rb | 10 +-
.../functional/arvados/v1/users_controller_test.rb | 24 +--
services/api/test/unit/collection_test.rb | 23 +-
services/api/test/unit/container_request_test.rb | 191 ++++++++++-------
services/api/test/unit/container_test.rb | 47 +++--
services/api/test/unit/log_test.rb | 78 +++++++
services/arv-git-httpd/arvados-git-httpd.service | 5 +
.../crunch-dispatch-slurm.service | 5 +
services/crunch-run/crunchrun.go | 173 ++++++++++-----
services/crunch-run/crunchrun_test.go | 161 +++++++-------
.../dockercleaner/arvados-docker-cleaner.service | 4 +
services/fuse/arvados_fuse/command.py | 41 ++--
services/fuse/arvados_fuse/unmount.py | 100 +++++++++
services/fuse/tests/test_crunchstat.py | 13 ++
services/fuse/tests/test_mount.py | 17 +-
services/fuse/tests/test_unmount.py | 61 ++++++
services/keep-balance/keep-balance.service | 4 +
services/keep-web/keep-web.service | 5 +
services/keepproxy/keepproxy.service | 5 +
services/keepstore/keepstore.service | 5 +
.../arvnodeman/computenode/dispatch/__init__.py | 14 +-
.../arvnodeman/computenode/driver/__init__.py | 17 ++
.../arvnodeman/computenode/driver/gce.py | 12 +-
services/nodemanager/arvnodeman/daemon.py | 33 +--
.../tests/test_computenode_driver_gce.py | 13 +-
services/nodemanager/tests/test_daemon.py | 21 --
services/ws/arvados-ws.service | 5 +
76 files changed, 1841 insertions(+), 803 deletions(-)
create mode 100644 sdk/python/arvados/cache.py
create mode 100644 sdk/python/tests/test_cache.py
create mode 100644 services/api/db/migrate/20170328215436_add_portable_data_hash_index_to_collections.rb
create mode 100644 services/api/db/migrate/20170330012505_add_output_ttl_to_container_requests.rb
create mode 100644 services/api/lib/audit_logs.rb
create mode 100644 services/fuse/arvados_fuse/unmount.py
create mode 100644 services/fuse/tests/test_crunchstat.py
create mode 100644 services/fuse/tests/test_unmount.py
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Those revisions listed above that are new to this repository have
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commit 38fcd08dda022d0167840fbb65222fe99b75fcf5
Merge: dfd3260 b50a3bc
Author: Lucas Di Pentima <lucas at curoverse.com>
Date: Thu Apr 6 16:15:25 2017 -0300
7824: Merge branch 'master' into 7824-arvls-arvput-collection-api-usage
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