[ARVADOS] updated: 69972d44f4806ea5ff89b9ba1afd6f51848968c9
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git at public.curoverse.com
Mon Sep 26 17:17:56 EDT 2016
Summary of changes:
crunch_scripts/cwl-runner | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
via 69972d44f4806ea5ff89b9ba1afd6f51848968c9 (commit)
via 91528dbaf47e8b89670b733f6cb5ce3709722b60 (commit)
from e0f4124bd0156f7cb029e5330e256086962f9e8e (commit)
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commit 69972d44f4806ea5ff89b9ba1afd6f51848968c9
Merge: e0f4124 91528db
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date: Mon Sep 26 17:17:35 2016 -0400
Merge branch '10081-update-cwl-runner' refs #10081
commit 91528dbaf47e8b89670b733f6cb5ce3709722b60
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date: Mon Sep 26 17:04:29 2016 -0400
10081: Fix renamed methods.
diff --git a/crunch_scripts/cwl-runner b/crunch_scripts/cwl-runner
index fe4e800..eec5aad 100755
--- a/crunch_scripts/cwl-runner
+++ b/crunch_scripts/cwl-runner
@@ -56,7 +56,7 @@ try:
runner = arvados_cwl.ArvCwlRunner(api_client=arvados.api('v1', model=OrderedJsonModel()))
- t = load_tool(job_order_object, runner.arvMakeTool)
+ t = load_tool(job_order_object, runner.arv_make_tool)
args = argparse.Namespace()
args.project_uuid = arvados.current_job()["owner_uuid"]
@@ -67,7 +67,7 @@ try:
args.ignore_docker_for_reuse = False
args.basedir = os.getcwd()
args.cwl_runner_job={"uuid": arvados.current_job()["uuid"], "state": arvados.current_job()["state"]}
- outputObj = runner.arvExecutor(t, job_order_object, **vars(args))
+ outputObj = runner.arv_executor(t, job_order_object, **vars(args))
files = {}
def capture(fileobj):
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