[ARVADOS] updated: 0ff7b94edaaaa07932ae757c0a2b7ba3fde026cb
Git user
git at public.curoverse.com
Thu Sep 22 12:32:41 EDT 2016
Summary of changes:
sdk/cwl/arvados_cwl/arvworkflow.py | 4 ++--
sdk/cwl/tests/test_job.py | 4 ++--
2 files changed, 4 insertions(+), 4 deletions(-)
via 0ff7b94edaaaa07932ae757c0a2b7ba3fde026cb (commit)
from 210889a5400ac6ef247078af14c0766f3639b988 (commit)
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commit 0ff7b94edaaaa07932ae757c0a2b7ba3fde026cb
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date: Thu Sep 22 12:32:32 2016 -0400
10081: Rename cwl.input.json to cwl.input.yml, fix test.
diff --git a/sdk/cwl/arvados_cwl/arvworkflow.py b/sdk/cwl/arvados_cwl/arvworkflow.py
index ab39409..6087648 100644
--- a/sdk/cwl/arvados_cwl/arvworkflow.py
+++ b/sdk/cwl/arvados_cwl/arvworkflow.py
@@ -106,12 +106,12 @@ class ArvadosWorkflow(Workflow):
"entryname": "workflow.cwl",
"entry": yaml.safe_dump(packed).replace("\\", "\\\\").replace('$(', '\$(').replace('${', '\${')
}, {
- "entryname": "cwl.input.json",
+ "entryname": "cwl.input.yml",
"entry": yaml.safe_dump(joborder_keepmount).replace("\\", "\\\\").replace('$(', '\$(').replace('${', '\${')
}]
}],
"hints": workflowobj["hints"],
- "arguments": ["--no-container", "--move-outputs", "workflow.cwl#main", "cwl.input.json"]
+ "arguments": ["--no-container", "--move-outputs", "workflow.cwl#main", "cwl.input.yml"]
}
kwargs["loader"] = self.doc_loader
kwargs["avsc_names"] = self.doc_schema
diff --git a/sdk/cwl/tests/test_job.py b/sdk/cwl/tests/test_job.py
index ea694e1..fdb4520 100644
--- a/sdk/cwl/tests/test_job.py
+++ b/sdk/cwl/tests/test_job.py
@@ -239,9 +239,9 @@ class TestWorkflow(unittest.TestCase):
'TMPDIR': '$(task.tmpdir)'},
'task.vwd': {
'workflow.cwl': '$(task.keep)/99999999999999999999999999999999+118/workflow.cwl',
- 'cwl.input.json': '$(task.keep)/99999999999999999999999999999999+118/cwl.input.json'
+ 'cwl.input.yml': '$(task.keep)/99999999999999999999999999999999+118/cwl.input.yml'
},
- 'command': [u'cwltool', u'--no-container', u'--move-outputs', u'workflow.cwl', u'cwl.input.json'],
+ 'command': [u'cwltool', u'--no-container', u'--move-outputs', u'workflow.cwl#main', u'cwl.input.yml'],
'task.stdout': 'cwl.output.json'}]},
'runtime_constraints': {
'min_scratch_mb_per_node': 2048,
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