[ARVADOS] updated: c72771616ec738750901575b82bf8206cbba45b3

[Git user]

Summary of changes:
 .../controllers/container_requests_controller.rb   |   4 +-
 .../app/controllers/work_units_controller.rb       |   2 +-
 apps/workbench/app/helpers/application_helper.rb   |  27 ++-
 .../views/container_requests/_show_inputs.html.erb |   9 +-
 build/run-tests.sh                                 |  20 +-
 doc/_config.yml                                    |   6 +
 .../_container_runtime_constraints.liquid          |   9 +
 doc/_includes/_mount_types.liquid                  |  63 ++++++
 .../methods/container_requests.html.textile.liquid |  74 +++++++
 ...xtile.liquid => containers.html.textile.liquid} |  48 ++---
 ...extile.liquid => workflows.html.textile.liquid} |  30 +--
 doc/api/schema/Container.html.textile.liquid       |  59 ++++++
 .../schema/ContainerRequest.html.textile.liquid    |  64 ++++++
 doc/api/schema/Workflow.html.textile.liquid        |  23 ++
 sdk/cwl/arvados_cwl/__init__.py                    |  21 +-
 sdk/cwl/arvados_cwl/arvjob.py                      |  93 +++++----
 sdk/cwl/arvados_cwl/arvworkflow.py                 |  41 ++++
 sdk/cwl/arvados_cwl/perf.py                        |  15 ++
 sdk/cwl/arvados_cwl/runner.py                      | 127 ++++++-----
 sdk/cwl/tests/test_container.py                    |   1 +
 sdk/cwl/tests/test_job.py                          |   1 +
 sdk/cwl/tests/test_submit.py                       |  48 ++++-
 sdk/cwl/tests/wf/expect_packed.cwl                 |  26 +++
 services/api/app/models/arvados_model.rb           |  12 ++
 services/api/app/models/container.rb               |  43 ++++
 services/api/app/models/container_request.rb       |  22 +-
 services/api/app/models/job.rb                     |  12 --
 services/api/test/fixtures/container_requests.yml  |   5 +-
 services/api/test/fixtures/containers.yml          |   4 -
 services/api/test/fixtures/workflows.yml           |   2 +-
 services/api/test/unit/container_request_test.rb   |  39 +++-
 services/api/test/unit/container_test.rb           | 231 +++++++++++++++++++++
 services/fuse/arvados_fuse/command.py              |   1 +
 services/fuse/tests/integration_test.py            |  51 +++--
 services/fuse/tests/mount_test_base.py             |  26 ++-
 35 files changed, 1042 insertions(+), 217 deletions(-)
 create mode 100644 doc/_includes/_container_runtime_constraints.liquid
 create mode 100644 doc/_includes/_mount_types.liquid
 create mode 100644 doc/api/methods/container_requests.html.textile.liquid
 copy doc/api/methods/{nodes.html.textile.liquid => containers.html.textile.liquid} (51%)
 copy doc/api/methods/{specimens.html.textile.liquid => workflows.html.textile.liquid} (59%)
 create mode 100644 doc/api/schema/Container.html.textile.liquid
 create mode 100644 doc/api/schema/ContainerRequest.html.textile.liquid
 create mode 100644 doc/api/schema/Workflow.html.textile.liquid
 create mode 100644 sdk/cwl/arvados_cwl/arvworkflow.py
 create mode 100644 sdk/cwl/arvados_cwl/perf.py
 create mode 100644 sdk/cwl/tests/wf/expect_packed.cwl

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Those revisions listed above that are new to this repository have
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commit c72771616ec738750901575b82bf8206cbba45b3
Merge: 90620c8 c0b20a7
Author: Tom Clegg <tom at curoverse.com>
Date:   Fri Sep 16 11:35:18 2016 -0400

    10014: Merge branch 'master' into 10014-collection-error-detail


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