[ARVADOS] updated: cae94f22b760c6c6899fc4d23db15d389535ff0a

Git user git at public.curoverse.com
Wed Sep 14 12:31:06 EDT 2016


Summary of changes:
 .../controllers/container_requests_controller.rb   |   4 +-
 .../app/controllers/work_units_controller.rb       |   2 +-
 apps/workbench/app/helpers/application_helper.rb   |  27 ++++-
 .../views/container_requests/_show_inputs.html.erb |   9 +-
 sdk/cwl/arvados_cwl/__init__.py                    |  10 +-
 sdk/cwl/arvados_cwl/arvworkflow.py                 |  41 +++++++
 sdk/cwl/arvados_cwl/runner.py                      | 129 ++++++++++++---------
 sdk/cwl/tests/test_container.py                    |   1 +
 sdk/cwl/tests/test_job.py                          |   1 +
 sdk/cwl/tests/test_submit.py                       |  46 +++++++-
 sdk/cwl/tests/wf/expect_packed.cwl                 |  26 +++++
 services/api/test/fixtures/container_requests.yml  |   5 +-
 services/api/test/fixtures/workflows.yml           |   2 +-
 13 files changed, 229 insertions(+), 74 deletions(-)
 create mode 100644 sdk/cwl/arvados_cwl/arvworkflow.py
 create mode 100644 sdk/cwl/tests/wf/expect_packed.cwl

       via  cae94f22b760c6c6899fc4d23db15d389535ff0a (commit)
       via  fcdac0fbe5daa25a8206ac8495ec43b05bb48446 (commit)
       via  6284bed37f6b2bb3c0671b401aa0d99d5ef7a5b7 (commit)
       via  1a87c77a5cfe200921a9d09e995383bc675e7370 (commit)
       via  2b50a5838d80dc6e93864a0b8180b423497a8e1d (commit)
       via  374a802e502d044973fd21ca68d2f6ab707bd770 (commit)
       via  d42022147d700c5c0363a4429ceb04567fcc0b3b (commit)
       via  0b187b107128a57c1f0c00057d39979ab53d4137 (commit)
       via  014e73c96c56bc588a02bfdbdd653c10be30f80c (commit)
       via  540adbf18728558df8797bf176ec666061cea934 (commit)
       via  0f53d219c91812baeac4cff3387196c6501ec0c0 (commit)
       via  86af9b2ebc9240e9041870786e87021c94f11eea (commit)
      from  6430b728cbce69b56adc01432fc9351088724efd (commit)

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commit cae94f22b760c6c6899fc4d23db15d389535ff0a
Merge: 6430b72 fcdac0f
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date:   Wed Sep 14 12:30:56 2016 -0400

    Merge branch '9766-register-workflow' closes #9766


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