[ARVADOS] updated: 19aca702ed17c7c89a5ba7d828a77105131e54db

Git user git at public.curoverse.com
Wed Sep 7 16:53:21 EDT 2016


Summary of changes:
 sdk/cwl/arvados_cwl/__init__.py | 3 ++-
 sdk/cwl/setup.py                | 2 +-
 2 files changed, 3 insertions(+), 2 deletions(-)

       via  19aca702ed17c7c89a5ba7d828a77105131e54db (commit)
      from  96185e5347e2303d0b5215ed61bd59c0f2bc84a1 (commit)

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commit 19aca702ed17c7c89a5ba7d828a77105131e54db
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date:   Wed Sep 7 16:53:10 2016 -0400

    Don't pass work_api twice in ArvadosCommandTool constructor.  Bump arvados-python-client minimum dependency because tests depend on it. refs #9944

diff --git a/sdk/cwl/arvados_cwl/__init__.py b/sdk/cwl/arvados_cwl/__init__.py
index 0d0d416..65a36f6 100644
--- a/sdk/cwl/arvados_cwl/__init__.py
+++ b/sdk/cwl/arvados_cwl/__init__.py
@@ -61,7 +61,8 @@ class ArvCwlRunner(object):
 
     def arvMakeTool(self, toolpath_object, **kwargs):
         if "class" in toolpath_object and toolpath_object["class"] == "CommandLineTool":
-            return ArvadosCommandTool(self, toolpath_object, work_api=self.work_api, **kwargs)
+            kwargs["work_api"] = self.work_api
+            return ArvadosCommandTool(self, toolpath_object, **kwargs)
         else:
             return cwltool.workflow.defaultMakeTool(toolpath_object, **kwargs)
 
diff --git a/sdk/cwl/setup.py b/sdk/cwl/setup.py
index bd9ea6e..b3d5968 100644
--- a/sdk/cwl/setup.py
+++ b/sdk/cwl/setup.py
@@ -33,7 +33,7 @@ setup(name='arvados-cwl-runner',
       # when updating the cwltool version pin.
       install_requires=[
           'cwltool==1.0.20160907141844',
-          'arvados-python-client>=0.1.20160714204738'
+          'arvados-python-client>=0.1.20160826210445'
       ],
       data_files=[
           ('share/doc/arvados-cwl-runner', ['LICENSE-2.0.txt', 'README.rst']),

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