[ARVADOS] updated: b0895b86f4332e9e299a706361ae6cce6facf78e
Git user
git at public.curoverse.com
Tue Oct 18 23:27:36 EDT 2016
Summary of changes:
.../app/controllers/work_units_controller.rb | 2 +-
.../app/views/work_units/_show_child.html.erb | 2 +-
.../app/views/work_units/show_component.js.erb | 13 -
apps/workbench/config/routes.rb | 2 +-
apps/workbench/test/diagnostics/pipeline_test.rb | 2 +-
apps/workbench/test/diagnostics_test_helper.rb | 7 +-
crunch_scripts/cwl-runner | 23 +-
.../install-arv-git-httpd.html.textile.liquid | 52 ++--
sdk/cli/bin/arv-run-pipeline-instance | 31 +--
sdk/cwl/arvados_cwl/arvjob.py | 6 +
sdk/cwl/arvados_cwl/crunch_script.py | 102 ++++++++
sdk/cwl/arvados_cwl/runner.py | 6 +-
sdk/cwl/tests/test_submit.py | 8 +-
sdk/go/arvados/duration.go | 5 +
sdk/go/streamer/streamer.go | 30 ++-
sdk/go/streamer/streamer_test.go | 10 +
sdk/python/tests/run_test_server.py | 3 +-
services/api/Gemfile | 2 +-
services/api/Gemfile.lock | 6 +-
services/arv-git-httpd/arvados-git-httpd.service | 2 +-
services/arv-git-httpd/doc.go | 35 ---
services/arv-git-httpd/git_handler.go | 31 ++-
services/arv-git-httpd/git_handler_test.go | 10 +-
services/arv-git-httpd/gitolite_test.go | 10 +-
services/arv-git-httpd/integration_test.go | 2 +
services/arv-git-httpd/main.go | 21 +-
services/arv-git-httpd/usage.go | 39 ++-
.../crunch-dispatch-slurm/crunch-dispatch-slurm.go | 7 +-
services/crunch-dispatch-slurm/squeue.go | 6 +-
services/keepstore/azure_blob_volume.go | 161 ++++++------
services/keepstore/azure_blob_volume_test.go | 12 +-
services/keepstore/bufferpool_test.go | 4 +-
services/keepstore/config.go | 179 +++++++++++++
services/keepstore/deprecated.go | 43 ++++
services/keepstore/handler_test.go | 110 ++++----
services/keepstore/handlers.go | 26 +-
services/keepstore/keepstore.go | 276 ++++-----------------
.../keepstore.service} | 6 +-
services/keepstore/keepstore_test.go | 28 +--
services/keepstore/perms.go | 9 +-
services/keepstore/perms_test.go | 28 ++-
services/keepstore/pull_worker_test.go | 34 +--
services/keepstore/s3_volume.go | 254 +++++++++++--------
services/keepstore/s3_volume_test.go | 110 ++++----
services/keepstore/trash_worker.go | 12 +-
services/keepstore/trash_worker_test.go | 22 +-
services/keepstore/usage.go | 124 +++++++++
services/keepstore/volume.go | 22 +-
services/keepstore/volume_generic_test.go | 51 ++--
services/keepstore/volume_test.go | 11 +-
services/keepstore/volume_unix.go | 138 +++++++----
services/keepstore/volume_unix_test.go | 37 ++-
services/login-sync/bin/arvados-login-sync | 41 ++-
.../docker/service/arv-git-httpd/run-service | 9 +-
54 files changed, 1347 insertions(+), 875 deletions(-)
delete mode 100644 apps/workbench/app/views/work_units/show_component.js.erb
create mode 100644 sdk/cwl/arvados_cwl/crunch_script.py
delete mode 100644 services/arv-git-httpd/doc.go
create mode 100644 services/keepstore/config.go
create mode 100644 services/keepstore/deprecated.go
copy services/{keepproxy/keepproxy.service => keepstore/keepstore.service} (53%)
create mode 100644 services/keepstore/usage.go
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commit b0895b86f4332e9e299a706361ae6cce6facf78e
Author: radhika <radhika at curoverse.com>
Date: Tue Oct 18 23:26:52 2016 -0400
10079: update show_child_component route and remove the show_component.js.erb file since it is no longer used.
diff --git a/apps/workbench/app/controllers/work_units_controller.rb b/apps/workbench/app/controllers/work_units_controller.rb
index b5cf7ea..577f939 100644
--- a/apps/workbench/app/controllers/work_units_controller.rb
+++ b/apps/workbench/app/controllers/work_units_controller.rb
@@ -112,7 +112,7 @@ class WorkUnitsController < ApplicationController
end
end
- def show_component
+ def show_child_component
data = JSON.load(params[:action_data])
current_obj = data['current_obj']
diff --git a/apps/workbench/app/views/work_units/_show_child.html.erb b/apps/workbench/app/views/work_units/_show_child.html.erb
index f6a6a69..853fcaa 100644
--- a/apps/workbench/app/views/work_units/_show_child.html.erb
+++ b/apps/workbench/app/views/work_units/_show_child.html.erb
@@ -51,7 +51,7 @@
</div>
<% name = if current_obj.respond_to?('name') then current_obj.name else '' end %>
- <% content_url = url_for(controller: :work_units, action: :show_component, name: name, main_obj: @object.uuid) %>
+ <% content_url = url_for(controller: :work_units, action: :show_child_component, name: name, main_obj: @object.uuid) %>
<div id="collapse<%=i%>" class="work-unit-component-detail panel-collapse collapse <%= if expanded then 'in' end %>" content-url="<%=content_url%>" action-data="<%={current_obj_type: current_obj.class.to_s, current_obj: current_obj.proxied, main_obj: @object, main_obj_kind: @object.kind}.to_json%>">
<div class="panel-body work-unit-component-detail-body">
</div>
diff --git a/apps/workbench/app/views/work_units/show_component.js.erb b/apps/workbench/app/views/work_units/show_component.js.erb
deleted file mode 100644
index 9fa2cdb..0000000
--- a/apps/workbench/app/views/work_units/show_component.js.erb
+++ /dev/null
@@ -1,13 +0,0 @@
-<%
- resource_class = resource_class_for_uuid params['wu']
- obj = object_for_dataclass(resource_class, params['wu'])
- if resource_class == Job
- wu = JobWorkUnit.new(obj, params['name'])
- elsif resource_class == PipelineInstance
- wu = PipelineInstanceWorkUnit.new(obj, params['name'])
- elsif resource_class == Container or resource_class == ContainerRequest
- wu = ContainerWorkUnit.new(obj, params['name'])
- end
-%>
-
-<%= escape_javascript(render partial: 'show_component', locals: {wu: wu}) %>
diff --git a/apps/workbench/config/routes.rb b/apps/workbench/config/routes.rb
index d5f341a..9bcebbd 100644
--- a/apps/workbench/config/routes.rb
+++ b/apps/workbench/config/routes.rb
@@ -16,7 +16,7 @@ ArvadosWorkbench::Application.routes.draw do
get "all_processes" => 'work_units#index', :as => :all_processes
get "choose_work_unit_templates" => 'work_unit_templates#choose', :as => :choose_work_unit_templates
resources :work_units
- post "work_units_show_component" => 'work_units#show_component', :as => :work_units_show_component
+ post "show_child_component" => 'work_units#show_child_component'
resources :nodes
resources :humans
resources :traits
commit cab7daa81bb157f4c754909754917bb6d184eb4a
Merge: 03295bf 99256e7
Author: radhika <radhika at curoverse.com>
Date: Tue Oct 18 21:16:55 2016 -0400
Merge branch 'master' into 10079-pipeline-display-perf
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