[ARVADOS] updated: fd36117b416e1190334d108058dc0c16ef24e964

[Git user]

Summary of changes:
 .../app/controllers/application_controller.rb      |   2 +-
 apps/workbench/config/application.default.yml      |   8 +-
 apps/workbench/test/helpers/share_object_helper.rb |   8 +-
 .../test/integration/pipeline_instances_test.rb    |   8 +-
 apps/workbench/test/integration/users_test.rb      |   3 +-
 apps/workbench/test/integration_helper.rb          |  18 ++-
 build/run-build-packages.sh                        |   4 +-
 crunch_scripts/cwl-runner                          |  40 ++----
 .../install-dispatch.html.textile.liquid           |  33 ++++-
 sdk/cwl/arvados_cwl/__init__.py                    |  95 ++++++++++++--
 sdk/cwl/arvados_cwl/arv-cwl-schema.yml             |  28 ++++
 sdk/cwl/arvados_cwl/arvcontainer.py                |  11 +-
 sdk/cwl/arvados_cwl/arvjob.py                      |  22 +++-
 sdk/cwl/arvados_cwl/fsaccess.py                    |   6 +-
 sdk/cwl/arvados_cwl/pathmapper.py                  |  28 +++-
 sdk/cwl/arvados_cwl/runner.py                      |  12 +-
 sdk/cwl/setup.py                                   |   2 +-
 sdk/cwl/tests/test_container.py                    |   4 +-
 sdk/cwl/tests/test_job.py                          | 125 +++++++++---------
 sdk/cwl/tests/test_make_output.py                  |  58 +++++++++
 sdk/cwl/tests/test_submit.py                       |  22 ++--
 sdk/go/crunchrunner/crunchrunner.go                |  69 ++++++++--
 sdk/go/crunchrunner/crunchrunner_test.go           |  28 ++++
 services/api/app/models/container.rb               |  27 ++++
 services/api/app/models/container_request.rb       |  12 +-
 services/api/config/application.default.yml        |   7 +
 .../migrate/20160926194129_add_container_count.rb  |   9 ++
 services/api/db/structure.sql                      |   7 +-
 services/api/test/unit/container_request_test.rb   |  44 ++++++-
 .../crunch-dispatch-slurm/crunch-dispatch-slurm.go |   2 +-
 services/crunch-dispatch-slurm/usage.go            |   1 +
 .../crunchstat_summary/summarizer.py               | 141 +++++++++++----------
 32 files changed, 654 insertions(+), 230 deletions(-)
 create mode 100644 sdk/cwl/tests/test_make_output.py
 create mode 100644 services/api/db/migrate/20160926194129_add_container_count.rb

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commit fd36117b416e1190334d108058dc0c16ef24e964
Author: radhika <radhika at curoverse.com>
Date:   Tue Oct 11 10:08:45 2016 -0400

    10078: Rename the workbench config param 'show_user_notifications_on_dashboard' as 'show_user_notifications' because they are in topnav, not on dashboard!

diff --git a/apps/workbench/app/controllers/application_controller.rb b/apps/workbench/app/controllers/application_controller.rb
index 3b6c89e..9da1d78 100644
--- a/apps/workbench/app/controllers/application_controller.rb
+++ b/apps/workbench/app/controllers/application_controller.rb
@@ -769,7 +769,7 @@ class ApplicationController < ActionController::Base
 
   helper_method :user_notifications
   def user_notifications
-    return [] if @errors or not current_user.andand.is_active or not Rails.configuration.show_user_notifications_on_dashboard
+    return [] if @errors or not current_user.andand.is_active or not Rails.configuration.show_user_notifications
     @notifications ||= @@notification_tests.map do |t|
       t.call(self, current_user)
     end.compact
diff --git a/apps/workbench/config/application.default.yml b/apps/workbench/config/application.default.yml
index ed2683d..e4e2782 100644
--- a/apps/workbench/config/application.default.yml
+++ b/apps/workbench/config/application.default.yml
@@ -281,8 +281,8 @@ common:
   # and display in the Log tab, while subscribing to web sockets.
   running_job_log_records_to_fetch: 2000
 
-  # In systems with many shared projects, dashboard loading can be
-  # slow due to collections indexing; use the following parameters
-  # to suppress certain properties from dashboard
+  # In systems with many shared projects, loading of dashboard and topnav
+  # cab be slow due to collections indexing; use the following parameters
+  # to suppress these properties
   show_recent_collections_on_dashboard: true
-  show_user_notifications_on_dashboard: true
+  show_user_notifications: true

commit 24bcfa0b87b87e4510fffe8a961a5d4a9fd34948
Merge: f678c1f 77e6411
Author: radhika <radhika at curoverse.com>
Date:   Tue Oct 11 10:04:16 2016 -0400

    Merge branch 'master' into 10078-dashboard-perf


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