[ARVADOS] updated: 12e22cbf3bbf047c001624be54ec802999bb5c1e

[Git user]

Summary of changes:
 crunch_scripts/cwl-runner           |  40 ++++---------
 sdk/cwl/arvados_cwl/__init__.py     |  92 ++++++++++++++++++++++++++---
 sdk/cwl/arvados_cwl/arvcontainer.py |  11 +++-
 sdk/cwl/arvados_cwl/arvjob.py       |  14 ++++-
 sdk/cwl/arvados_cwl/fsaccess.py     |   6 +-
 sdk/cwl/arvados_cwl/pathmapper.py   |  28 +++++++--
 sdk/cwl/arvados_cwl/runner.py       |  10 +++-
 sdk/cwl/tests/test_job.py           | 114 +++++++++++++++++++-----------------
 sdk/cwl/tests/test_make_output.py   |  58 ++++++++++++++++++
 sdk/cwl/tests/test_submit.py        |  22 ++++---
 10 files changed, 282 insertions(+), 113 deletions(-)
 create mode 100644 sdk/cwl/tests/test_make_output.py

       via  12e22cbf3bbf047c001624be54ec802999bb5c1e (commit)
       via  84d86c1721bf549c2dc38df95f29f3579b36a5ae (commit)
       via  c7a461e97640697e390aff96bf25126972396b19 (commit)
       via  0e4e5d028290bc8d5a4ffe5469a6993f640027a6 (commit)
       via  d182d19257f6cbe71fd75c29e1a81ba59a2aa79c (commit)
       via  83139cd2df6b7d86f352bee46d1ad86146bd093b (commit)
       via  f72b0e8bcc350966ce54954711bed538c527eb00 (commit)
       via  ad4344e21db3c894869d09fdcb09e3202bf9cf78 (commit)
      from  6c0bf267d795a3ca49c3258c9490714c9e18d333 (commit)

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commit 12e22cbf3bbf047c001624be54ec802999bb5c1e
Merge: 6c0bf26 84d86c1
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date:   Wed Oct 5 11:09:37 2016 -0400

    Merge branch '10165-cwl-outputs' closes #10165


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