[ARVADOS] created: 2f6b00cc2a8765e9f8e07f98239f8f1f06887e2e

Git user git at public.curoverse.com
Tue Nov 22 15:37:20 EST 2016


        at  2f6b00cc2a8765e9f8e07f98239f8f1f06887e2e (commit)


commit 2f6b00cc2a8765e9f8e07f98239f8f1f06887e2e
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date:   Tue Nov 22 15:25:21 2016 -0500

    10583: Bump versions.

diff --git a/build/run-build-packages.sh b/build/run-build-packages.sh
index 320f9d4..9eaa214 100755
--- a/build/run-build-packages.sh
+++ b/build/run-build-packages.sh
@@ -467,7 +467,7 @@ fpm_build lockfile "" "" python 0.12.2 --epoch 1
 # So we build this thing separately.
 #
 # Ward, 2016-03-17
-fpm_build schema_salad "" "" python 1.18.20161005190847 --depends "${PYTHON2_PKG_PREFIX}-lockfile >= 1:0.12.2-2"
+fpm_build schema_salad "" "" python 1.20.20161122192122 --depends "${PYTHON2_PKG_PREFIX}-lockfile >= 1:0.12.2-2"
 
 # And schema_salad now depends on ruamel-yaml, which apparently has a braindead setup.py that requires special arguments to build (otherwise, it aborts with 'error: you have to install with "pip install ."'). Sigh.
 # Ward, 2016-05-26
@@ -478,7 +478,7 @@ fpm_build ruamel.yaml "" "" python 0.12.4 --python-setup-py-arguments "--single-
 fpm_build cwltest "" "" python 1.0.20160907111242
 
 # And for cwltool we have the same problem as for schema_salad. Ward, 2016-03-17
-fpm_build cwltool "" "" python 1.0.20161107145355
+fpm_build cwltool "" "" python 1.0.20161122201220
 
 # FPM eats the trailing .0 in the python-rdflib-jsonld package when built with 'rdflib-jsonld>=0.3.0'. Force the version. Ward, 2016-03-25
 fpm_build rdflib-jsonld "" "" python 0.3.0
diff --git a/sdk/cwl/arvados_cwl/__init__.py b/sdk/cwl/arvados_cwl/__init__.py
index 2b2e15b..9cabedf 100644
--- a/sdk/cwl/arvados_cwl/__init__.py
+++ b/sdk/cwl/arvados_cwl/__init__.py
@@ -586,6 +586,7 @@ def main(args, stdout, stderr, api_client=None, keep_client=None):
 
     arvargs.conformance_test = None
     arvargs.use_container = True
+    arvargs.relax_path_checks = True
 
     return cwltool.main.main(args=arvargs,
                              stdout=stdout,
diff --git a/sdk/cwl/setup.py b/sdk/cwl/setup.py
index 9d9a1e1..bb673f4 100644
--- a/sdk/cwl/setup.py
+++ b/sdk/cwl/setup.py
@@ -48,7 +48,7 @@ setup(name='arvados-cwl-runner',
       # Make sure to update arvados/build/run-build-packages.sh as well
       # when updating the cwltool version pin.
       install_requires=[
-          'cwltool==1.0.20161107145355',
+          'cwltool==1.0.20161122201220',
           'arvados-python-client>=0.1.20160826210445'
       ],
       data_files=[

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