[ARVADOS] updated: a078c965c1ed1e54f678ad93305b91b6c7dcb1a9

Git user git at public.curoverse.com
Tue Nov 15 13:38:10 EST 2016


Summary of changes:
 doc/_config.yml                                    |  83 +++--
 doc/_layouts/default.html.liquid                   |   2 +-
 doc/api/authentication.html.textile.liquid         |  40 ---
 doc/api/crunch-scripts.html.textile.liquid         |   5 +-
 doc/api/execution.html.textile.liquid              |  27 ++
 doc/api/index.html.textile.liquid                  |  44 +--
 doc/api/methods.html.textile.liquid                | 120 +++----
 .../api_client_authorizations.html.textile.liquid  |  54 +++-
 doc/api/methods/api_clients.html.textile.liquid    |  40 ++-
 .../methods/authorized_keys.html.textile.liquid    |  43 ++-
 doc/api/methods/collections.html.textile.liquid    |  55 +++-
 .../methods/container_requests.html.textile.liquid | 100 ++++--
 doc/api/methods/containers.html.textile.liquid     |  76 ++++-
 doc/api/methods/groups.html.textile.liquid         |  47 +--
 doc/api/methods/humans.html.textile.liquid         |  39 ++-
 doc/api/methods/job_tasks.html.textile.liquid      |  55 +++-
 doc/api/methods/jobs.html.textile.liquid           | 101 ++++--
 doc/api/methods/keep_disks.html.textile.liquid     |  52 ++-
 doc/api/methods/keep_services.html.textile.liquid  |  52 +--
 doc/api/methods/links.html.textile.liquid          |  69 ++--
 doc/api/methods/logs.html.textile.liquid           |  49 ++-
 doc/api/methods/nodes.html.textile.liquid          |  50 ++-
 .../methods/pipeline_instances.html.textile.liquid |  44 ++-
 .../methods/pipeline_templates.html.textile.liquid | 182 ++++++++++-
 doc/api/methods/repositories.html.textile.liquid   |  45 ++-
 doc/api/methods/specimens.html.textile.liquid      |  41 ++-
 doc/api/methods/traits.html.textile.liquid         |  40 ++-
 doc/api/methods/users.html.textile.liquid          |  67 ++--
 .../methods/virtual_machines.html.textile.liquid   |  52 +--
 doc/api/methods/workflows.html.textile.liquid      |  44 ++-
 doc/api/permission-model.html.textile.liquid       | 143 +++------
 doc/api/requests.html.textile.liquid               | 349 +++++++++++++++++++++
 doc/api/resources.html.textile.liquid              |  46 ++-
 doc/api/schema/ApiClient.html.textile.liquid       |  24 --
 .../ApiClientAuthorization.html.textile.liquid     |  29 --
 doc/api/schema/AuthorizedKey.html.textile.liquid   |  24 --
 doc/api/schema/Collection.html.textile.liquid      |  39 ---
 doc/api/schema/Container.html.textile.liquid       |  59 ----
 .../schema/ContainerRequest.html.textile.liquid    |  70 -----
 doc/api/schema/Group.html.textile.liquid           |  25 --
 doc/api/schema/Human.html.textile.liquid           |  19 --
 doc/api/schema/Job.html.textile.liquid             |  69 ----
 doc/api/schema/JobTask.html.textile.liquid         |  47 ---
 doc/api/schema/KeepDisk.html.textile.liquid        |  31 --
 doc/api/schema/KeepService.html.textile.liquid     |  24 --
 doc/api/schema/Link.html.textile.liquid            |  83 -----
 doc/api/schema/Log.html.textile.liquid             |  33 --
 doc/api/schema/Node.html.textile.liquid            |  28 --
 .../schema/PipelineInstance.html.textile.liquid    |  26 --
 .../schema/PipelineTemplate.html.textile.liquid    | 161 ----------
 doc/api/schema/Repository.html.textile.liquid      |  25 --
 doc/api/schema/Specimen.html.textile.liquid        |  22 --
 doc/api/schema/Trait.html.textile.liquid           |  22 --
 doc/api/schema/User.html.textile.liquid            |  30 --
 doc/api/schema/VirtualMachine.html.textile.liquid  |  21 --
 doc/api/schema/Workflow.html.textile.liquid        |  23 --
 doc/api/storage.html.textile.liquid                | 170 ++++++++++
 doc/api/tokens.html.textile.liquid                 |  63 ++++
 doc/images/Arvados_Permissions.svg                 |   4 +
 doc/images/Crunch_dispatch.svg                     |   4 +
 doc/images/Keep_manifests.svg                      |   4 +
 doc/images/Keep_reading_writing_block.svg          |   4 +
 doc/images/Keep_rendezvous_hashing.svg             |   4 +
 doc/images/Session_Establishment.svg               |   4 +
 .../install-prerequisites.html.textile.liquid      |   4 +-
 doc/sdk/cli/install.html.textile.liquid            |   1 -
 doc/sdk/go/example.html.textile.liquid             |  76 +++++
 doc/sdk/go/index.html.textile.liquid               |  15 +-
 doc/sdk/index.html.textile.liquid                  |  13 +-
 doc/sdk/java/example.html.textile.liquid           |  78 +++++
 doc/sdk/java/index.html.textile.liquid             |  11 +-
 doc/sdk/perl/example.html.textile.liquid           |  81 +++++
 doc/sdk/perl/index.html.textile.liquid             |  59 +---
 doc/sdk/python/events.html.textile.liquid          |   2 +-
 doc/sdk/python/example.html.textile.liquid         |  51 +++
 doc/sdk/python/sdk-python.html.textile.liquid      |   3 +-
 doc/sdk/ruby/example.html.textile.liquid           |  75 +++++
 doc/sdk/ruby/index.html.textile.liquid             |  74 +----
 doc/user/cwl/cwl-runner.html.textile.liquid        |   1 +
 .../reference/job-pipeline-ref.html.textile.liquid |   2 +-
 .../running-external-program.html.textile.liquid   |   4 +-
 .../tutorial-submit-job.html.textile.liquid        |   4 +-
 ..._log_uuids_to_container_request_search_index.rb |  21 ++
 services/api/db/structure.sql                      |   6 +-
 services/arv-git-httpd/main.go                     |   2 +-
 .../crunch-dispatch-slurm/crunch-dispatch-slurm.go |   2 +-
 services/keep-web/main.go                          |   2 +-
 services/keepproxy/keepproxy.go                    |   2 +-
 services/keepstore/keepstore.go                    |   2 +-
 89 files changed, 2210 insertions(+), 1828 deletions(-)
 delete mode 100644 doc/api/authentication.html.textile.liquid
 create mode 100644 doc/api/execution.html.textile.liquid
 create mode 100644 doc/api/requests.html.textile.liquid
 delete mode 100644 doc/api/schema/ApiClient.html.textile.liquid
 delete mode 100644 doc/api/schema/ApiClientAuthorization.html.textile.liquid
 delete mode 100644 doc/api/schema/AuthorizedKey.html.textile.liquid
 delete mode 100644 doc/api/schema/Collection.html.textile.liquid
 delete mode 100644 doc/api/schema/Container.html.textile.liquid
 delete mode 100644 doc/api/schema/ContainerRequest.html.textile.liquid
 delete mode 100644 doc/api/schema/Group.html.textile.liquid
 delete mode 100644 doc/api/schema/Human.html.textile.liquid
 delete mode 100644 doc/api/schema/Job.html.textile.liquid
 delete mode 100644 doc/api/schema/JobTask.html.textile.liquid
 delete mode 100644 doc/api/schema/KeepDisk.html.textile.liquid
 delete mode 100644 doc/api/schema/KeepService.html.textile.liquid
 delete mode 100644 doc/api/schema/Link.html.textile.liquid
 delete mode 100644 doc/api/schema/Log.html.textile.liquid
 delete mode 100644 doc/api/schema/Node.html.textile.liquid
 delete mode 100644 doc/api/schema/PipelineInstance.html.textile.liquid
 delete mode 100644 doc/api/schema/PipelineTemplate.html.textile.liquid
 delete mode 100644 doc/api/schema/Repository.html.textile.liquid
 delete mode 100644 doc/api/schema/Specimen.html.textile.liquid
 delete mode 100644 doc/api/schema/Trait.html.textile.liquid
 delete mode 100644 doc/api/schema/User.html.textile.liquid
 delete mode 100644 doc/api/schema/VirtualMachine.html.textile.liquid
 delete mode 100644 doc/api/schema/Workflow.html.textile.liquid
 create mode 100644 doc/api/storage.html.textile.liquid
 create mode 100644 doc/api/tokens.html.textile.liquid
 create mode 100644 doc/images/Arvados_Permissions.svg
 create mode 100644 doc/images/Crunch_dispatch.svg
 create mode 100644 doc/images/Keep_manifests.svg
 create mode 100644 doc/images/Keep_reading_writing_block.svg
 create mode 100644 doc/images/Keep_rendezvous_hashing.svg
 create mode 100644 doc/images/Session_Establishment.svg
 create mode 100644 doc/sdk/go/example.html.textile.liquid
 create mode 100644 doc/sdk/java/example.html.textile.liquid
 create mode 100644 doc/sdk/perl/example.html.textile.liquid
 create mode 100644 doc/sdk/python/example.html.textile.liquid
 create mode 100644 doc/sdk/ruby/example.html.textile.liquid
 create mode 100644 services/api/db/migrate/20161115174218_add_output_and_log_uuids_to_container_request_search_index.rb

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commit a078c965c1ed1e54f678ad93305b91b6c7dcb1a9
Author: radhika <radhika at curoverse.com>
Date:   Tue Nov 15 13:18:46 2016 -0500

    10293: add output and log uuids to containter_request search index.

diff --git a/services/api/db/migrate/20161115174218_add_output_and_log_uuids_to_container_request_search_index.rb b/services/api/db/migrate/20161115174218_add_output_and_log_uuids_to_container_request_search_index.rb
new file mode 100644
index 0000000..b069d02
--- /dev/null
+++ b/services/api/db/migrate/20161115174218_add_output_and_log_uuids_to_container_request_search_index.rb
@@ -0,0 +1,21 @@
+class AddOutputAndLogUuidsToContainerRequestSearchIndex < ActiveRecord::Migration
+  def up
+    begin
+      remove_index :container_requests, :name => 'container_requests_search_index'
+    rescue
+    end
+    add_index :container_requests,
+              ["uuid", "owner_uuid", "modified_by_client_uuid", "modified_by_user_uuid", "name", "state", "requesting_container_uuid", "container_uuid", "container_image", "cwd", "output_path", "output_uuid", "log_uuid"],
+              name: "container_requests_search_index"
+  end
+
+  def down
+    begin
+      remove_index :container_requests, :name => 'container_requests_search_index'
+    rescue
+    end
+	  add_index :container_requests,
+              ["uuid", "owner_uuid", "modified_by_client_uuid", "modified_by_user_uuid", "name", "state", "requesting_container_uuid", "container_uuid", "container_image", "cwd", "output_path"],
+              name: "container_requests_search_index"
+  end
+end
diff --git a/services/api/db/structure.sql b/services/api/db/structure.sql
index 2170f5e..e715cd6 100644
--- a/services/api/db/structure.sql
+++ b/services/api/db/structure.sql
@@ -1527,7 +1527,7 @@ CREATE INDEX container_requests_full_text_search_idx ON container_requests USING
 -- Name: container_requests_search_index; Type: INDEX; Schema: public; Owner: -; Tablespace: 
 --
 
-CREATE INDEX container_requests_search_index ON container_requests USING btree (uuid, owner_uuid, modified_by_client_uuid, modified_by_user_uuid, name, state, requesting_container_uuid, container_uuid, container_image, cwd, output_path);
+CREATE INDEX container_requests_search_index ON container_requests USING btree (uuid, owner_uuid, modified_by_client_uuid, modified_by_user_uuid, name, state, requesting_container_uuid, container_uuid, container_image, cwd, output_path, output_uuid, log_uuid);
 
 
 --
@@ -2702,4 +2702,6 @@ INSERT INTO schema_migrations (version) VALUES ('20161019171346');
 
 INSERT INTO schema_migrations (version) VALUES ('20161111143147');
 
-INSERT INTO schema_migrations (version) VALUES ('20161115171221');
\ No newline at end of file
+INSERT INTO schema_migrations (version) VALUES ('20161115171221');
+
+INSERT INTO schema_migrations (version) VALUES ('20161115174218');
\ No newline at end of file

commit 53a9aa7651a9fed6d88f4ece0f8d4cd10a77a63f
Merge: 5a553b7 eae48c3
Author: radhika <radhika at curoverse.com>
Date:   Tue Nov 15 12:58:02 2016 -0500

    Merge branch 'master' into 10293-container-request-output-uuid


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