[ARVADOS-DEV] updated: 688d8cd7d751459ddb7190aa612879847353f47e

[Git user]

Summary of changes:
 jenkins/run-cwl-test.sh | 31 ++++++++++++++++++-------------
 1 file changed, 18 insertions(+), 13 deletions(-)

       via  688d8cd7d751459ddb7190aa612879847353f47e (commit)
      from  6d870a5e3d87fea1e2e1a06a4d98afc9102c9d61 (commit)

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commit 688d8cd7d751459ddb7190aa612879847353f47e
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date:   Fri Nov 4 10:06:09 2016 -0400

    Improve error handling and reporting in run-cwl-test.sh script. no issue #

diff --git a/jenkins/run-cwl-test.sh b/jenkins/run-cwl-test.sh
index 068acd8..f5ffefe 100755
--- a/jenkins/run-cwl-test.sh
+++ b/jenkins/run-cwl-test.sh
@@ -1,7 +1,10 @@
 #!/bin/bash
 
+set -o pipefail
+
 DEBUG=0
 SSH_PORT=22
+ACCT=ci
 
 function usage {
     echo >&2
@@ -11,6 +14,7 @@ function usage {
     echo >&2
     echo >&2 "$0 options:"
     echo >&2 "  -p, --port <ssh port>         SSH port to use (default 22)"
+    echo >&2 "      --acct <username>         Account to log in with"
     echo >&2 "  -d, --debug                   Enable debug output"
     echo >&2 "  -h, --help                    Display this help and exit"
     echo >&2
@@ -27,7 +31,7 @@ function usage {
     echo >&2 "\"POST /arvados/v1/collections\","
     echo >&2 "\"POST /arvados/v1/links\","
     echo >&2 "\"GET /arvados/v1/users/current\","
-    echo >&2 "\"POST /arvados/v1/users/current\"," 
+    echo >&2 "\"POST /arvados/v1/users/current\","
     echo >&2 "\"GET /arvados/v1/jobs\","
     echo >&2 "\"POST /arvados/v1/jobs\","
     echo >&2 "\"GET /arvados/v1/pipeline_instances\","
@@ -35,13 +39,13 @@ function usage {
     echo >&2 "\"POST /arvados/v1/pipeline_instances\","
     echo >&2 "\"GET /arvados/v1/collections/\","
     echo >&2 "\"POST /arvados/v1/collections/\","
-    echo >&2 "\"GET /arvados/v1/logs\" ]" 
+    echo >&2 "\"GET /arvados/v1/logs\" ]"
     echo >&2
 }
 
 # NOTE: This requires GNU getopt (part of the util-linux package on Debian-based distros).
 TEMP=`getopt -o hdp: \
-    --long help,debug,port: \
+    --long help,debug,port:,acct: \
     -n "$0" -- "$@"`
 
 if [ $? != 0 ] ; then echo "Use -h for help"; exit 1 ; fi
@@ -54,6 +58,9 @@ do
         -p | --port)
             SSH_PORT="$2"; shift 2
             ;;
+        --acct)
+            ACCT="$2"; shift 2
+            ;;
         -d | --debug)
             DEBUG=1
             shift
@@ -105,16 +112,16 @@ function run_command() {
   return_var=$2
   command=$3
 
-  title "Running '${command/ARVADOS_API_TOKEN=??????????????????????????????????????????????????/ARVADOS_API_TOKEN=suppressed}' on $node"
+  title "Running '${command/ARVADOS_API_TOKEN=*/ARVADOS_API_TOKEN=suppressed}' on $node"
   TMP_FILE=`mktemp`
   if [[ "$DEBUG" != "0" ]]; then
-    ssh -t -p$SSH_PORT -o "StrictHostKeyChecking no" -o "ConnectTimeout 125" ci@$node -C "$command" | tee $TMP_FILE
+    ssh -t -p$SSH_PORT -o "StrictHostKeyChecking no" -o "ConnectTimeout 125" $ACCT@$node -C "$command" | tee $TMP_FILE
+    ECODE=$?
   else
-    ssh -t -p$SSH_PORT -o "StrictHostKeyChecking no" -o "ConnectTimeout 125" ci@$node -C "$command" > $TMP_FILE 2>&1
+    ssh -t -p$SSH_PORT -o "StrictHostKeyChecking no" -o "ConnectTimeout 125" $ACCT@$node -C "$command" > $TMP_FILE 2>&1
+    ECODE=$?
   fi
 
-  ECODE=$?
-
   if [[ "$ECODE" != "255" && "$ECODE" != "0"  ]]; then
     # Ssh exists 255 if the connection timed out. Just ignore that, it's possible that this node is
     #   a shell node that is down.
@@ -125,8 +132,7 @@ function run_command() {
     fi
   fi
   if [[ "$ECODE" == "255" ]]; then
-    title "Connection timed out"
-    ECODE=0
+    title "Connection denied or timed out"
   fi
   rm -f $TMP_FILE
   eval "$return_var=$ECODE"
@@ -153,11 +159,10 @@ fi
 run_command shell.$IDENTIFIER ECODE "if [[ ! -e arvados-cwl-runner-with-checksum.sh ]]; then printf \"%s\n%s\n\" '#!/bin/sh' 'exec arvados-cwl-runner --compute-checksum \"\$@\"' > arvados-cwl-runner-with-checksum.sh; chmod 755 arvados-cwl-runner-with-checksum.sh; fi"
 
 if [[ "$ECODE" != "0" ]]; then
-  echo "Failed to create ~ci/arvados-cwl-runner-with-checksum.sh"
+  echo "Failed to create ~$ACCT/arvados-cwl-runner-with-checksum.sh"
   exit $ECODE
 fi
 
-run_command shell.$IDENTIFIER ECODE "cd common-workflow-language; git pull; ARVADOS_API_HOST=$ARVADOS_API_HOST ARVADOS_API_TOKEN=$ARVADOS_API_TOKEN ./run_test.sh RUNNER=/home/ci/arvados-cwl-runner-with-checksum.sh "
+run_command shell.$IDENTIFIER ECODE "cd common-workflow-language; git pull; ARVADOS_API_HOST=$ARVADOS_API_HOST ARVADOS_API_TOKEN=$ARVADOS_API_TOKEN ./run_test.sh RUNNER=/home/$ACCT/arvados-cwl-runner-with-checksum.sh "
 
 exit $ECODE
-

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