[ARVADOS] created: 2a0472e6b0e94265d78fb22b5652619a7700e86b
Git user
git at public.curoverse.com
Thu Nov 3 13:46:45 EDT 2016
at 2a0472e6b0e94265d78fb22b5652619a7700e86b (commit)
commit 2a0472e6b0e94265d78fb22b5652619a7700e86b
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date: Thu Oct 27 21:54:14 2016 -0400
9849: Cache docker lookup.
diff --git a/sdk/cwl/arvados_cwl/arvdocker.py b/sdk/cwl/arvados_cwl/arvdocker.py
index 244dd3d..f9dba6e 100644
--- a/sdk/cwl/arvados_cwl/arvdocker.py
+++ b/sdk/cwl/arvados_cwl/arvdocker.py
@@ -1,19 +1,28 @@
import logging
import sys
+import threading
import cwltool.docker
from cwltool.errors import WorkflowException
import arvados.commands.keepdocker
-
logger = logging.getLogger('arvados.cwl-runner')
+cached_lookups = {}
+cached_lookups_lock = threading.Lock()
+
def arv_docker_get_image(api_client, dockerRequirement, pull_image, project_uuid):
"""Check if a Docker image is available in Keep, if not, upload it using arv-keepdocker."""
if "dockerImageId" not in dockerRequirement and "dockerPull" in dockerRequirement:
dockerRequirement["dockerImageId"] = dockerRequirement["dockerPull"]
+ global cached_lookups
+ global cached_lookups_lock
+ with cached_lookups_lock:
+ if dockerRequirement["dockerImageId"] in cached_lookups:
+ return cached_lookups[dockerRequirement["dockerImageId"]]
+
sp = dockerRequirement["dockerImageId"].split(":")
image_name = sp[0]
image_tag = sp[1] if len(sp) > 1 else None
@@ -44,4 +53,14 @@ def arv_docker_get_image(api_client, dockerRequirement, pull_image, project_uuid
raise WorkflowException("Could not find Docker image %s:%s" % (image_name, image_tag))
pdh = api_client.collections().get(uuid=images[0][0]).execute()["portable_data_hash"]
+
+ with cached_lookups_lock:
+ cached_lookups[dockerRequirement["dockerImageId"]] = pdh
+
return pdh
+
+def arv_docker_clear_cache():
+ global cached_lookups
+ global cached_lookups_lock
+ with cached_lookups_lock:
+ cached_lookups = {}
diff --git a/sdk/cwl/tests/test_container.py b/sdk/cwl/tests/test_container.py
index 8ca5398..93100ae 100644
--- a/sdk/cwl/tests/test_container.py
+++ b/sdk/cwl/tests/test_container.py
@@ -1,4 +1,5 @@
import arvados_cwl
+from arvados_cwl.arvdocker import arv_docker_clear_cache
import logging
import mock
import unittest
@@ -21,6 +22,8 @@ class TestContainer(unittest.TestCase):
@mock.patch("arvados.commands.keepdocker.list_images_in_arv")
def test_run(self, keepdocker):
for enable_reuse in (True, False):
+ arv_docker_clear_cache()
+
runner = mock.MagicMock()
runner.project_uuid = "zzzzz-8i9sb-zzzzzzzzzzzzzzz"
runner.ignore_docker_for_reuse = False
@@ -72,6 +75,7 @@ class TestContainer(unittest.TestCase):
# For the remaining fields, the defaults will apply: {'cores': 1, 'ram': 1024, 'outdirSize': 1024, 'tmpdirSize': 1024}
@mock.patch("arvados.commands.keepdocker.list_images_in_arv")
def test_resource_requirements(self, keepdocker):
+ arv_docker_clear_cache()
runner = mock.MagicMock()
runner.project_uuid = "zzzzz-8i9sb-zzzzzzzzzzzzzzz"
runner.ignore_docker_for_reuse = False
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