[ARVADOS] updated: 13a3834ae61d03e81f4c3eee93006addc0fed746
Git user
git at public.curoverse.com
Thu Nov 3 11:12:38 EDT 2016
Summary of changes:
sdk/cwl/tests/test_submit.py | 41 +++++++++++++++++++++++++++++++++++++++++
1 file changed, 41 insertions(+)
via 13a3834ae61d03e81f4c3eee93006addc0fed746 (commit)
from dabb7587d58a004a7250eab3e7e82e9916319de9 (commit)
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commit 13a3834ae61d03e81f4c3eee93006addc0fed746
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date: Thu Nov 3 11:12:34 2016 -0400
10448: Add tests that --disable-reuse is passed to inner cwl-runner job or container.
diff --git a/sdk/cwl/tests/test_submit.py b/sdk/cwl/tests/test_submit.py
index a77c34f..3f6f521 100644
--- a/sdk/cwl/tests/test_submit.py
+++ b/sdk/cwl/tests/test_submit.py
@@ -248,6 +248,26 @@ class TestSubmit(unittest.TestCase):
self.assertEqual(capture_stdout.getvalue(),
stubs.expect_pipeline_uuid + '\n')
+
+ @mock.patch("time.sleep")
+ @stubs
+ def test_submit_no_reuse(self, stubs, tm):
+ capture_stdout = cStringIO.StringIO()
+ exited = arvados_cwl.main(
+ ["--submit", "--no-wait", "--debug", "--disable-reuse",
+ "tests/wf/submit_wf.cwl", "tests/submit_test_job.json"],
+ capture_stdout, sys.stderr, api_client=stubs.api)
+ self.assertEqual(exited, 0)
+
+ stubs.expect_pipeline_instance["components"]["cwl-runner"]["script_parameters"]["arv:enable_reuse"] = {"value": False}
+
+ expect_pipeline = copy.deepcopy(stubs.expect_pipeline_instance)
+ expect_pipeline["owner_uuid"] = stubs.fake_user_uuid
+ stubs.api.pipeline_instances().create.assert_called_with(
+ body=expect_pipeline)
+ self.assertEqual(capture_stdout.getvalue(),
+ stubs.expect_pipeline_uuid + '\n')
+
@mock.patch("time.sleep")
@stubs
def test_submit_with_project_uuid(self, stubs, tm):
@@ -310,6 +330,27 @@ class TestSubmit(unittest.TestCase):
self.assertEqual(capture_stdout.getvalue(),
stubs.expect_container_request_uuid + '\n')
+ @stubs
+ def test_submit_container_no_reuse(self, stubs):
+ capture_stdout = cStringIO.StringIO()
+ try:
+ exited = arvados_cwl.main(
+ ["--submit", "--no-wait", "--api=containers", "--debug", "--disable-reuse",
+ "tests/wf/submit_wf.cwl", "tests/submit_test_job.json"],
+ capture_stdout, sys.stderr, api_client=stubs.api, keep_client=stubs.keep_client)
+ self.assertEqual(exited, 0)
+ except:
+ logging.exception("")
+
+ stubs.expect_container_spec["command"] = ['arvados-cwl-runner', '--local', '--api=containers', '--disable-reuse', '/var/lib/cwl/workflow/submit_wf.cwl', '/var/lib/cwl/job/cwl.input.json']
+
+ expect_container = copy.deepcopy(stubs.expect_container_spec)
+ expect_container["owner_uuid"] = stubs.fake_user_uuid
+ stubs.api.container_requests().create.assert_called_with(
+ body=expect_container)
+ self.assertEqual(capture_stdout.getvalue(),
+ stubs.expect_container_request_uuid + '\n')
+
class TestCreateTemplate(unittest.TestCase):
@stubs
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