[ARVADOS] updated: cdcddca613c896fd8395a4045c858945451c3fa0

[Git user]

Summary of changes:
 crunch_scripts/cwl-runner                 |  91 +++++++++++
 docker/jobs/Dockerfile                    |   6 +-
 docker/jobs/apt.arvados.org.list          |   2 +-
 sdk/cwl/arvados_cwl/__init__.py           | 245 ++++++++++++++++++++++++++----
 sdk/cwl/setup.py                          |   4 +-
 sdk/cwl/test_with_arvbox.sh               |   3 +
 sdk/cwl/tests/input/blorp.txt             |   1 +
 sdk/cwl/tests/submit_test_job.json        |   6 +
 sdk/cwl/tests/test_submit.py              |  60 ++++++++
 sdk/cwl/tests/tool/blub.txt               |   1 +
 sdk/cwl/tests/tool/submit_tool.cwl        |  19 +++
 sdk/cwl/tests/wf/submit_wf.cwl            |  16 ++
 sdk/python/arvados/commands/keepdocker.py |  10 +-
 sdk/python/arvados/commands/run.py        |  26 +++-
 sdk/python/setup.py                       |   1 +
 15 files changed, 443 insertions(+), 48 deletions(-)
 create mode 100755 crunch_scripts/cwl-runner
 create mode 100644 sdk/cwl/tests/input/blorp.txt
 create mode 100644 sdk/cwl/tests/submit_test_job.json
 create mode 100644 sdk/cwl/tests/test_submit.py
 create mode 100644 sdk/cwl/tests/tool/blub.txt
 create mode 100644 sdk/cwl/tests/tool/submit_tool.cwl
 create mode 100644 sdk/cwl/tests/wf/submit_wf.cwl

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commit cdcddca613c896fd8395a4045c858945451c3fa0
Merge: e68d56d c19a7bb
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date:   Thu Mar 31 11:35:49 2016 -0400

    Merge branch '8654-arv-jobs-cwl-runner' closes #8654


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