[ARVADOS] updated: ba7bc0c85a32d33ab1fab23cc47a507b4eafd06e
Git user
git at public.curoverse.com
Tue Mar 15 21:33:19 EDT 2016
Summary of changes:
Makefile | 17 +
README | 21 -
README.md | 74 ++
apps/workbench/app/models/job.rb | 12 +
apps/workbench/app/views/jobs/_show_log.html.erb | 3 +-
apps/workbench/config/application.default.yml | 4 +
apps/workbench/test/integration/websockets_test.rb | 64 ++
build/create-plot-data-from-log.sh | 59 ++
build/libcloud-pin | 1 +
build/package-build-dockerfiles/.gitignore | 2 +
build/package-build-dockerfiles/Makefile | 29 +
build/package-build-dockerfiles/README | 13 +
.../build-all-build-containers.sh | 16 +
build/package-build-dockerfiles/centos6/Dockerfile | 31 +
build/package-build-dockerfiles/debian7/Dockerfile | 19 +
build/package-build-dockerfiles/debian8/Dockerfile | 19 +
.../ubuntu1204/Dockerfile | 19 +
.../ubuntu1404/Dockerfile | 19 +
build/package-test-dockerfiles/centos6/Dockerfile | 20 +
.../centos6/localrepo.repo | 5 +
build/package-test-dockerfiles/debian7/Dockerfile | 14 +
build/package-test-dockerfiles/debian8/Dockerfile | 14 +
.../package-test-dockerfiles/ubuntu1204/Dockerfile | 14 +
.../package-test-dockerfiles/ubuntu1404/Dockerfile | 14 +
build/package-testing/common-test-packages.sh | 28 +
build/package-testing/deb-common-test-packages.sh | 37 +
.../test-package-arvados-api-server.sh | 20 +
.../test-package-arvados-node-manager.sh | 7 +
.../test-package-arvados-sso-server.sh | 172 +++++
.../test-package-arvados-workbench.sh | 20 +
.../test-package-python27-python-arvados-fuse.sh | 6 +
...ackage-python27-python-arvados-python-client.sh | 6 +
build/package-testing/test-packages-centos6.sh | 44 ++
build/package-testing/test-packages-debian7.sh | 1 +
build/package-testing/test-packages-debian8.sh | 1 +
build/package-testing/test-packages-ubuntu1204.sh | 1 +
build/package-testing/test-packages-ubuntu1404.sh | 1 +
build/rails-package-scripts/README.md | 14 +
build/rails-package-scripts/arvados-api-server.sh | 32 +
build/rails-package-scripts/arvados-sso-server.sh | 9 +
build/rails-package-scripts/arvados-workbench.sh | 7 +
build/rails-package-scripts/postinst.sh | 251 ++++++
build/rails-package-scripts/postrm.sh | 23 +
build/rails-package-scripts/prerm.sh | 22 +
build/rails-package-scripts/step2.sh | 28 +
build/run-build-docker-images.sh | 167 ++++
build/run-build-docker-jobs-image.sh | 164 ++++
build/run-build-packages-all-targets.sh | 98 +++
build/run-build-packages-one-target.sh | 203 +++++
build/run-build-packages-sso.sh | 161 ++++
build/run-build-packages.sh | 543 +++++++++++++
build/run-library.sh | 348 +++++++++
build/run-tests.sh | 845 +++++++++++++++++++++
crunch_scripts/crunchrunner | 2 +
doc/_config.yml | 2 +
doc/_includes/_run_command_foreach_example.liquid | 2 +-
doc/install/arvbox.html.textile.liquid | 141 ++++
doc/install/index.html.textile.liquid | 1 +
.../install-crunch-dispatch.html.textile.liquid | 4 +
sdk/cli/bin/crunch-job | 561 ++++++++------
sdk/cli/test/binstub_clean_fail/mount | 2 +-
sdk/cli/test/test_crunch-job.rb | 2 +-
sdk/cwl/arvados_cwl/__init__.py | 205 +++--
sdk/cwl/setup.py | 6 +-
sdk/cwl/test_with_arvbox.sh | 71 ++
.../cwl/tests/__init__.py | 0
sdk/cwl/tests/test_job.py | 81 ++
sdk/go/crunchrunner/crunchrunner.go | 17 +
sdk/python/arvados/api.py | 1 +
sdk/python/arvados/commands/arv_copy.py | 92 ++-
sdk/python/setup.py | 3 +-
sdk/ruby/arvados.gemspec | 5 +-
.../v1/api_client_authorizations_controller.rb | 65 +-
.../arvados/v1/repositories_controller.rb | 4 +-
.../api/app/models/api_client_authorization.rb | 5 +-
services/api/config/application.default.yml | 1 +
services/api/lib/crunch_dispatch.rb | 40 +-
services/api/test/fixtures/collections.yml | 11 +
.../api_client_authorizations_controller_test.rb | 92 ++-
.../arvados/v1/repositories_controller_test.rb | 18 +-
services/api/test/unit/crunch_dispatch_test.rb | 85 +++
services/arv-git-httpd/gitolite_test.go | 14 +-
.../crunch-dispatch-slurm/crunch-dispatch-slurm.go | 8 +-
.../crunch-dispatch-slurm_test.go | 17 +-
services/crunch-run/crunchrun.go | 20 +-
services/crunch-run/crunchrun_test.go | 65 +-
services/crunch-run/logging_test.go | 12 +-
services/crunch-run/upload.go | 2 +-
services/datamanager/collection/collection.go | 58 +-
services/datamanager/datamanager.go | 9 +-
services/datamanager/datamanager_test.go | 26 +-
services/nodemanager/arvnodeman/baseactor.py | 85 +++
services/nodemanager/arvnodeman/clientactor.py | 2 +-
.../arvnodeman/computenode/dispatch/__init__.py | 11 +-
.../arvnodeman/computenode/driver/__init__.py | 24 +-
.../arvnodeman/computenode/driver/ec2.py | 3 -
.../arvnodeman/computenode/driver/gce.py | 4 -
services/nodemanager/arvnodeman/config.py | 4 +-
services/nodemanager/arvnodeman/daemon.py | 23 +-
services/nodemanager/arvnodeman/launcher.py | 12 +-
services/nodemanager/arvnodeman/timedcallback.py | 2 +-
services/nodemanager/tests/test_daemon.py | 1 +
services/nodemanager/tests/test_failure.py | 39 +
services/nodemanager/tests/testutil.py | 5 +-
tools/arvbox/bin/arvbox | 439 +++++++++++
tools/arvbox/lib/arvbox/docker/Dockerfile.base | 42 +
tools/arvbox/lib/arvbox/docker/Dockerfile.demo | 17 +
tools/arvbox/lib/arvbox/docker/Dockerfile.dev | 16 +
.../lib/arvbox/docker/application_yml_override.py | 24 +
tools/arvbox/lib/arvbox/docker/common.sh | 62 ++
tools/arvbox/lib/arvbox/docker/createusers.sh | 34 +
tools/arvbox/lib/arvbox/docker/crunch-setup.sh | 28 +
tools/arvbox/lib/arvbox/docker/fuse.conf | 1 +
tools/arvbox/lib/arvbox/docker/gitolite.rc | 213 ++++++
tools/arvbox/lib/arvbox/docker/keep-setup.sh | 51 ++
tools/arvbox/lib/arvbox/docker/logger | 2 +
.../lib/arvbox/docker/runit-docker/.gitignore | 32 +
.../arvbox/lib/arvbox/docker/runit-docker/LICENSE | 28 +
.../arvbox/lib/arvbox/docker/runit-docker/Makefile | 18 +
.../lib/arvbox/docker/runit-docker/README.md | 24 +
.../arvbox/docker/runit-docker/debian/changelog | 12 +
.../lib/arvbox/docker/runit-docker/debian/compat | 1 +
.../lib/arvbox/docker/runit-docker/debian/control | 14 +
.../arvbox/docker/runit-docker/debian/copyright | 31 +
.../lib/arvbox/docker/runit-docker/debian/docs | 1 +
.../lib/arvbox/docker/runit-docker/debian/rules | 32 +
.../docker/runit-docker/debian/source/format | 1 +
.../lib/arvbox/docker/runit-docker/runit-docker | 4 +
.../lib/arvbox/docker/runit-docker/runit-docker.c | 32 +
tools/arvbox/lib/arvbox/docker/runsu.sh | 14 +
.../arvbox/docker/service/api/log/main/.gitstub} | 0
tools/arvbox/lib/arvbox/docker/service/api/log/run | 1 +
tools/arvbox/lib/arvbox/docker/service/api/run | 1 +
.../lib/arvbox/docker/service/api/run-service | 102 +++
.../service/arv-git-httpd/log/main/.gitstub} | 0
.../arvbox/docker/service/arv-git-httpd/log/run | 1 +
.../lib/arvbox/docker/service/arv-git-httpd/run | 1 +
.../docker/service/arv-git-httpd/run-service | 27 +
.../crunch-dispatch-local/log/main/.gitstub} | 0
.../docker/service/crunch-dispatch-local/log/run | 1 +
.../docker/service/crunch-dispatch-local/run | 1 +
.../service/crunch-dispatch-local/run-service | 22 +
.../service/crunch-dispatch0/log/main/.gitstub} | 0
.../arvbox/docker/service/crunch-dispatch0/log/run | 1 +
.../lib/arvbox/docker/service/crunch-dispatch0/run | 1 +
.../docker/service/crunch-dispatch0/run-service | 2 +
.../service/crunch-dispatch1/log/main/.gitstub} | 0
.../arvbox/docker/service/crunch-dispatch1/log/run | 1 +
.../lib/arvbox/docker/service/crunch-dispatch1/run | 1 +
.../docker/service/crunch-dispatch1/run-service | 3 +
.../arvbox/docker/service/doc/log/main/.gitstub} | 0
tools/arvbox/lib/arvbox/docker/service/doc/log/run | 1 +
tools/arvbox/lib/arvbox/docker/service/doc/run | 1 +
.../lib/arvbox/docker/service/doc/run-service | 44 ++
.../docker/service/docker/log/main/.gitstub} | 0
.../lib/arvbox/docker/service/docker/log/run | 1 +
tools/arvbox/lib/arvbox/docker/service/docker/run | 102 +++
.../docker/service/gitolite/log/main/.gitstub} | 0
.../lib/arvbox/docker/service/gitolite/log/run | 1 +
.../arvbox/lib/arvbox/docker/service/gitolite/run | 1 +
.../lib/arvbox/docker/service/gitolite/run-service | 116 +++
.../docker/service/keep-web/log/main/.gitstub} | 0
.../lib/arvbox/docker/service/keep-web/log/run | 1 +
.../arvbox/lib/arvbox/docker/service/keep-web/run | 1 +
.../lib/arvbox/docker/service/keep-web/run-service | 21 +
.../docker/service/keepproxy/log/main/.gitstub} | 0
.../lib/arvbox/docker/service/keepproxy/log/run | 1 +
.../arvbox/lib/arvbox/docker/service/keepproxy/run | 1 +
.../arvbox/docker/service/keepproxy/run-service | 41 +
.../docker/service/keepstore0/log/main/.gitstub} | 0
.../lib/arvbox/docker/service/keepstore0/log/run | 1 +
.../lib/arvbox/docker/service/keepstore0/run | 1 +
.../arvbox/docker/service/keepstore0/run-service | 3 +
.../docker/service/keepstore1/log/main/.gitstub} | 0
.../lib/arvbox/docker/service/keepstore1/log/run | 1 +
.../lib/arvbox/docker/service/keepstore1/run | 1 +
.../arvbox/docker/service/keepstore1/run-service | 3 +
.../docker/service/postgres/log/main/.gitstub} | 0
.../lib/arvbox/docker/service/postgres/log/run | 1 +
.../arvbox/lib/arvbox/docker/service/postgres/run | 12 +
.../lib/arvbox/docker/service/postgres/run-service | 14 +
tools/arvbox/lib/arvbox/docker/service/ready/run | 1 +
.../lib/arvbox/docker/service/ready/run-service | 97 +++
.../arvbox/docker/service/sdk/log/main/.gitstub} | 0
tools/arvbox/lib/arvbox/docker/service/sdk/log/run | 1 +
tools/arvbox/lib/arvbox/docker/service/sdk/run | 5 +
.../lib/arvbox/docker/service/sdk/run-service | 28 +
.../docker/service/slurmctld/log/main/.gitstub} | 0
.../lib/arvbox/docker/service/slurmctld/log/run | 1 +
.../arvbox/lib/arvbox/docker/service/slurmctld/run | 31 +
.../docker/service/slurmd/log/main/.gitstub} | 0
.../lib/arvbox/docker/service/slurmd/log/run | 1 +
tools/arvbox/lib/arvbox/docker/service/slurmd/run | 6 +
.../arvbox/docker/service/ssh/log/main/.gitstub} | 0
tools/arvbox/lib/arvbox/docker/service/ssh/log/run | 1 +
tools/arvbox/lib/arvbox/docker/service/ssh/run | 10 +
.../arvbox/docker/service/sso/log/main/.gitstub} | 0
tools/arvbox/lib/arvbox/docker/service/sso/log/run | 1 +
tools/arvbox/lib/arvbox/docker/service/sso/run | 1 +
.../lib/arvbox/docker/service/sso/run-service | 87 +++
.../arvbox/docker/service/vm/log/main/.gitstub} | 0
tools/arvbox/lib/arvbox/docker/service/vm/log/run | 1 +
tools/arvbox/lib/arvbox/docker/service/vm/run | 21 +
.../lib/arvbox/docker/service/vm/run-service | 36 +
.../docker/service/workbench/log/main/.gitstub} | 0
.../lib/arvbox/docker/service/workbench/log/run | 1 +
.../arvbox/lib/arvbox/docker/service/workbench/run | 15 +
.../arvbox/docker/service/workbench/run-service | 40 +
tools/arvbox/lib/arvbox/docker/waitforpostgres.sh | 4 +
.../crunchstat_summary/summarizer.py | 5 +
210 files changed, 7303 insertions(+), 527 deletions(-)
create mode 100644 Makefile
delete mode 100644 README
create mode 100644 README.md
create mode 100755 build/create-plot-data-from-log.sh
create mode 100644 build/libcloud-pin
create mode 100644 build/package-build-dockerfiles/.gitignore
create mode 100644 build/package-build-dockerfiles/Makefile
create mode 100644 build/package-build-dockerfiles/README
create mode 100755 build/package-build-dockerfiles/build-all-build-containers.sh
create mode 100644 build/package-build-dockerfiles/centos6/Dockerfile
create mode 100644 build/package-build-dockerfiles/debian7/Dockerfile
create mode 100644 build/package-build-dockerfiles/debian8/Dockerfile
create mode 100644 build/package-build-dockerfiles/ubuntu1204/Dockerfile
create mode 100644 build/package-build-dockerfiles/ubuntu1404/Dockerfile
create mode 100644 build/package-test-dockerfiles/centos6/Dockerfile
create mode 100644 build/package-test-dockerfiles/centos6/localrepo.repo
create mode 100644 build/package-test-dockerfiles/debian7/Dockerfile
create mode 100644 build/package-test-dockerfiles/debian8/Dockerfile
create mode 100644 build/package-test-dockerfiles/ubuntu1204/Dockerfile
create mode 100644 build/package-test-dockerfiles/ubuntu1404/Dockerfile
create mode 100755 build/package-testing/common-test-packages.sh
create mode 100755 build/package-testing/deb-common-test-packages.sh
create mode 100755 build/package-testing/test-package-arvados-api-server.sh
create mode 100755 build/package-testing/test-package-arvados-node-manager.sh
create mode 100755 build/package-testing/test-package-arvados-sso-server.sh
create mode 100755 build/package-testing/test-package-arvados-workbench.sh
create mode 100755 build/package-testing/test-package-python27-python-arvados-fuse.sh
create mode 100755 build/package-testing/test-package-python27-python-arvados-python-client.sh
create mode 100755 build/package-testing/test-packages-centos6.sh
create mode 120000 build/package-testing/test-packages-debian7.sh
create mode 120000 build/package-testing/test-packages-debian8.sh
create mode 120000 build/package-testing/test-packages-ubuntu1204.sh
create mode 120000 build/package-testing/test-packages-ubuntu1404.sh
create mode 100644 build/rails-package-scripts/README.md
create mode 100644 build/rails-package-scripts/arvados-api-server.sh
create mode 100644 build/rails-package-scripts/arvados-sso-server.sh
create mode 100644 build/rails-package-scripts/arvados-workbench.sh
create mode 100644 build/rails-package-scripts/postinst.sh
create mode 100644 build/rails-package-scripts/postrm.sh
create mode 100644 build/rails-package-scripts/prerm.sh
create mode 100644 build/rails-package-scripts/step2.sh
create mode 100755 build/run-build-docker-images.sh
create mode 100755 build/run-build-docker-jobs-image.sh
create mode 100755 build/run-build-packages-all-targets.sh
create mode 100755 build/run-build-packages-one-target.sh
create mode 100755 build/run-build-packages-sso.sh
create mode 100755 build/run-build-packages.sh
create mode 100755 build/run-library.sh
create mode 100755 build/run-tests.sh
create mode 100755 crunch_scripts/crunchrunner
create mode 100644 doc/install/arvbox.html.textile.liquid
create mode 100755 sdk/cwl/test_with_arvbox.sh
copy apps/workbench/app/views/application/_breadcrumb_page_name.html.erb => sdk/cwl/tests/__init__.py (100%)
create mode 100644 sdk/cwl/tests/test_job.py
create mode 100644 services/nodemanager/arvnodeman/baseactor.py
create mode 100644 services/nodemanager/tests/test_failure.py
create mode 100755 tools/arvbox/bin/arvbox
create mode 100644 tools/arvbox/lib/arvbox/docker/Dockerfile.base
create mode 100644 tools/arvbox/lib/arvbox/docker/Dockerfile.demo
create mode 100644 tools/arvbox/lib/arvbox/docker/Dockerfile.dev
create mode 100755 tools/arvbox/lib/arvbox/docker/application_yml_override.py
create mode 100644 tools/arvbox/lib/arvbox/docker/common.sh
create mode 100755 tools/arvbox/lib/arvbox/docker/createusers.sh
create mode 100755 tools/arvbox/lib/arvbox/docker/crunch-setup.sh
create mode 100644 tools/arvbox/lib/arvbox/docker/fuse.conf
create mode 100644 tools/arvbox/lib/arvbox/docker/gitolite.rc
create mode 100755 tools/arvbox/lib/arvbox/docker/keep-setup.sh
create mode 100755 tools/arvbox/lib/arvbox/docker/logger
create mode 100644 tools/arvbox/lib/arvbox/docker/runit-docker/.gitignore
create mode 100644 tools/arvbox/lib/arvbox/docker/runit-docker/LICENSE
create mode 100644 tools/arvbox/lib/arvbox/docker/runit-docker/Makefile
create mode 100644 tools/arvbox/lib/arvbox/docker/runit-docker/README.md
create mode 100644 tools/arvbox/lib/arvbox/docker/runit-docker/debian/changelog
create mode 100644 tools/arvbox/lib/arvbox/docker/runit-docker/debian/compat
create mode 100644 tools/arvbox/lib/arvbox/docker/runit-docker/debian/control
create mode 100644 tools/arvbox/lib/arvbox/docker/runit-docker/debian/copyright
create mode 100644 tools/arvbox/lib/arvbox/docker/runit-docker/debian/docs
create mode 100755 tools/arvbox/lib/arvbox/docker/runit-docker/debian/rules
create mode 100644 tools/arvbox/lib/arvbox/docker/runit-docker/debian/source/format
create mode 100755 tools/arvbox/lib/arvbox/docker/runit-docker/runit-docker
create mode 100644 tools/arvbox/lib/arvbox/docker/runit-docker/runit-docker.c
create mode 100755 tools/arvbox/lib/arvbox/docker/runsu.sh
copy tools/{crunchstat-summary/tests/__init__.py => arvbox/lib/arvbox/docker/service/api/log/main/.gitstub} (100%)
create mode 120000 tools/arvbox/lib/arvbox/docker/service/api/log/run
create mode 120000 tools/arvbox/lib/arvbox/docker/service/api/run
create mode 100755 tools/arvbox/lib/arvbox/docker/service/api/run-service
copy tools/{crunchstat-summary/tests/__init__.py => arvbox/lib/arvbox/docker/service/arv-git-httpd/log/main/.gitstub} (100%)
create mode 120000 tools/arvbox/lib/arvbox/docker/service/arv-git-httpd/log/run
create mode 120000 tools/arvbox/lib/arvbox/docker/service/arv-git-httpd/run
create mode 100755 tools/arvbox/lib/arvbox/docker/service/arv-git-httpd/run-service
copy tools/{crunchstat-summary/tests/__init__.py => arvbox/lib/arvbox/docker/service/crunch-dispatch-local/log/main/.gitstub} (100%)
create mode 120000 tools/arvbox/lib/arvbox/docker/service/crunch-dispatch-local/log/run
create mode 120000 tools/arvbox/lib/arvbox/docker/service/crunch-dispatch-local/run
create mode 100755 tools/arvbox/lib/arvbox/docker/service/crunch-dispatch-local/run-service
copy tools/{crunchstat-summary/tests/__init__.py => arvbox/lib/arvbox/docker/service/crunch-dispatch0/log/main/.gitstub} (100%)
create mode 120000 tools/arvbox/lib/arvbox/docker/service/crunch-dispatch0/log/run
create mode 120000 tools/arvbox/lib/arvbox/docker/service/crunch-dispatch0/run
create mode 100755 tools/arvbox/lib/arvbox/docker/service/crunch-dispatch0/run-service
copy tools/{crunchstat-summary/tests/__init__.py => arvbox/lib/arvbox/docker/service/crunch-dispatch1/log/main/.gitstub} (100%)
create mode 120000 tools/arvbox/lib/arvbox/docker/service/crunch-dispatch1/log/run
create mode 120000 tools/arvbox/lib/arvbox/docker/service/crunch-dispatch1/run
create mode 100755 tools/arvbox/lib/arvbox/docker/service/crunch-dispatch1/run-service
copy tools/{crunchstat-summary/tests/__init__.py => arvbox/lib/arvbox/docker/service/doc/log/main/.gitstub} (100%)
create mode 120000 tools/arvbox/lib/arvbox/docker/service/doc/log/run
create mode 120000 tools/arvbox/lib/arvbox/docker/service/doc/run
create mode 100755 tools/arvbox/lib/arvbox/docker/service/doc/run-service
copy tools/{crunchstat-summary/tests/__init__.py => arvbox/lib/arvbox/docker/service/docker/log/main/.gitstub} (100%)
create mode 120000 tools/arvbox/lib/arvbox/docker/service/docker/log/run
create mode 100755 tools/arvbox/lib/arvbox/docker/service/docker/run
copy tools/{crunchstat-summary/tests/__init__.py => arvbox/lib/arvbox/docker/service/gitolite/log/main/.gitstub} (100%)
create mode 120000 tools/arvbox/lib/arvbox/docker/service/gitolite/log/run
create mode 120000 tools/arvbox/lib/arvbox/docker/service/gitolite/run
create mode 100755 tools/arvbox/lib/arvbox/docker/service/gitolite/run-service
copy tools/{crunchstat-summary/tests/__init__.py => arvbox/lib/arvbox/docker/service/keep-web/log/main/.gitstub} (100%)
create mode 120000 tools/arvbox/lib/arvbox/docker/service/keep-web/log/run
create mode 120000 tools/arvbox/lib/arvbox/docker/service/keep-web/run
create mode 100755 tools/arvbox/lib/arvbox/docker/service/keep-web/run-service
copy tools/{crunchstat-summary/tests/__init__.py => arvbox/lib/arvbox/docker/service/keepproxy/log/main/.gitstub} (100%)
create mode 120000 tools/arvbox/lib/arvbox/docker/service/keepproxy/log/run
create mode 120000 tools/arvbox/lib/arvbox/docker/service/keepproxy/run
create mode 100755 tools/arvbox/lib/arvbox/docker/service/keepproxy/run-service
copy tools/{crunchstat-summary/tests/__init__.py => arvbox/lib/arvbox/docker/service/keepstore0/log/main/.gitstub} (100%)
create mode 120000 tools/arvbox/lib/arvbox/docker/service/keepstore0/log/run
create mode 120000 tools/arvbox/lib/arvbox/docker/service/keepstore0/run
create mode 100755 tools/arvbox/lib/arvbox/docker/service/keepstore0/run-service
copy tools/{crunchstat-summary/tests/__init__.py => arvbox/lib/arvbox/docker/service/keepstore1/log/main/.gitstub} (100%)
create mode 120000 tools/arvbox/lib/arvbox/docker/service/keepstore1/log/run
create mode 120000 tools/arvbox/lib/arvbox/docker/service/keepstore1/run
create mode 100755 tools/arvbox/lib/arvbox/docker/service/keepstore1/run-service
copy tools/{crunchstat-summary/tests/__init__.py => arvbox/lib/arvbox/docker/service/postgres/log/main/.gitstub} (100%)
create mode 120000 tools/arvbox/lib/arvbox/docker/service/postgres/log/run
create mode 100755 tools/arvbox/lib/arvbox/docker/service/postgres/run
create mode 100755 tools/arvbox/lib/arvbox/docker/service/postgres/run-service
create mode 120000 tools/arvbox/lib/arvbox/docker/service/ready/run
create mode 100755 tools/arvbox/lib/arvbox/docker/service/ready/run-service
copy tools/{crunchstat-summary/tests/__init__.py => arvbox/lib/arvbox/docker/service/sdk/log/main/.gitstub} (100%)
create mode 120000 tools/arvbox/lib/arvbox/docker/service/sdk/log/run
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Those revisions listed above that are new to this repository have
not appeared on any other notification email; so we list those
revisions in full, below.
commit ba7bc0c85a32d33ab1fab23cc47a507b4eafd06e
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date: Tue Mar 15 21:29:28 2016 -0400
6518: Add check for sbatch/strigger command line in test.
diff --git a/services/crunch-dispatch-slurm/crunch-dispatch-slurm.go b/services/crunch-dispatch-slurm/crunch-dispatch-slurm.go
index bc1b0a5..8fbc0fa 100644
--- a/services/crunch-dispatch-slurm/crunch-dispatch-slurm.go
+++ b/services/crunch-dispatch-slurm/crunch-dispatch-slurm.go
@@ -137,16 +137,20 @@ func dispatchSlurm(priorityPollInterval int, crunchRunCommand, finishCommand str
}
// sbatchCmd
-var sbatchCmd = func(uuid string) *exec.Cmd {
+func sbatchFunc(uuid string) *exec.Cmd {
return exec.Command("sbatch", "--job-name="+uuid, "--share", "--parsable")
}
+var sbatchCmd = sbatchFunc
+
// striggerCmd
-var striggerCmd = func(jobid, containerUUID, finishCommand, apiHost, apiToken, apiInsecure string) *exec.Cmd {
+func striggerFunc(jobid, containerUUID, finishCommand, apiHost, apiToken, apiInsecure string) *exec.Cmd {
return exec.Command("strigger", "--set", "--jobid="+jobid, "--fini",
fmt.Sprintf("--program=%s %s %s %s %s", finishCommand, apiHost, apiToken, apiInsecure, containerUUID))
}
+var striggerCmd = striggerFunc
+
// Submit job to slurm using sbatch.
func submit(container Container, crunchRunCommand string) (jobid string, submitErr error) {
submitErr = nil
diff --git a/services/crunch-dispatch-slurm/crunch-dispatch-slurm_test.go b/services/crunch-dispatch-slurm/crunch-dispatch-slurm_test.go
index 56dd3ce..5b52f91 100644
--- a/services/crunch-dispatch-slurm/crunch-dispatch-slurm_test.go
+++ b/services/crunch-dispatch-slurm/crunch-dispatch-slurm_test.go
@@ -64,19 +64,26 @@ func (s *TestSuite) Test_doMain(c *C) {
args := []string{"-poll-interval", "2", "-container-priority-poll-interval", "1", "-crunch-run-command", "echo"}
os.Args = append(os.Args, args...)
+ var sbatchCmdLine []string
+ var striggerCmdLine []string
+
// Override sbatchCmd
defer func(orig func(string) *exec.Cmd) {
sbatchCmd = orig
}(sbatchCmd)
sbatchCmd = func(uuid string) *exec.Cmd {
+ sbatchCmdLine = sbatchFunc(uuid).Args
return exec.Command("echo", uuid)
}
// Override striggerCmd
- defer func(orig func(jobid, containerUUID, finishCommand, apiHost, apiToken, apiInsecure string) *exec.Cmd) {
+ defer func(orig func(jobid, containerUUID, finishCommand,
+ apiHost, apiToken, apiInsecure string) *exec.Cmd) {
striggerCmd = orig
}(striggerCmd)
striggerCmd = func(jobid, containerUUID, finishCommand, apiHost, apiToken, apiInsecure string) *exec.Cmd {
+ striggerCmdLine = striggerFunc(jobid, containerUUID, finishCommand,
+ apiHost, apiToken, apiInsecure).Args
go func() {
time.Sleep(5 * time.Second)
arv.Update("containers", containerUUID,
@@ -99,15 +106,19 @@ func (s *TestSuite) Test_doMain(c *C) {
var containers ContainerList
err := arv.List("containers", params, &containers)
c.Check(err, IsNil)
- c.Assert(len(containers.Items), Equals, 1)
+ c.Check(len(containers.Items), Equals, 1)
err = doMain()
c.Check(err, IsNil)
+ c.Check(sbatchCmdLine, DeepEquals, []string{"sbatch", "--job-name=zzzzz-dz642-queuedcontainer", "--share", "--parsable"})
+ c.Check(striggerCmdLine, DeepEquals, []string{"strigger", "--set", "--jobid=zzzzz-dz642-queuedcontainer\n", "--fini",
+ "--program=/usr/bin/crunch-finish-slurm.sh 0.0.0.0:36857 4axaw8zxe0qm22wa6urpp5nskcne8z88cvbupv653y1njyi05h 1 zzzzz-dz642-queuedcontainer"})
+
// There should be no queued containers now
err = arv.List("containers", params, &containers)
c.Check(err, IsNil)
- c.Assert(len(containers.Items), Equals, 0)
+ c.Check(len(containers.Items), Equals, 0)
// Previously "Queued" container should now be in "Complete" state
var container Container
commit 7553f2bc93a1f84d433c74616559cae482bd1c46
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date: Tue Mar 15 20:03:40 2016 -0400
6518: Add crunch-dispatch-slurm to tests.
diff --git a/build/run-tests.sh b/build/run-tests.sh
index 1552e40..f56e46a 100755
--- a/build/run-tests.sh
+++ b/build/run-tests.sh
@@ -68,7 +68,9 @@ services/keepproxy
services/keepstore
services/login-sync
services/nodemanager
+services/crunch-run
services/crunch-dispatch-local
+services/crunch-dispatch-slurm
sdk/cli
sdk/pam
sdk/python
@@ -743,6 +745,7 @@ gostuff=(
services/datamanager/keep
services/datamanager
services/crunch-dispatch-local
+ services/crunch-dispatch-slurm
services/crunch-run
tools/keep-rsync
)
commit 2e437823d2d19edf5c6be392f3604a499308cd6e
Merge: 62dff43 a301612
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date: Tue Mar 15 20:02:30 2016 -0400
Merge branch 'master' into 6518-crunch2-dispatch-slurm
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