[ARVADOS] updated: 5f82d0d9a0381605cdccfa1cfacaf670f139f47b
Git user
git at public.curoverse.com
Mon Jun 13 16:28:50 EDT 2016
Summary of changes:
sdk/cwl/arvados_cwl/runner.py | 6 ++++++
1 file changed, 6 insertions(+)
via 5f82d0d9a0381605cdccfa1cfacaf670f139f47b (commit)
from 0fb601b385db9c25d083cb7fd058cafe57bb76ac (commit)
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commit 5f82d0d9a0381605cdccfa1cfacaf670f139f47b
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date: Mon Jun 13 16:28:45 2016 -0400
8442: import fixups
diff --git a/sdk/cwl/arvados_cwl/runner.py b/sdk/cwl/arvados_cwl/runner.py
index 0cc23ab..f754348 100644
--- a/sdk/cwl/arvados_cwl/runner.py
+++ b/sdk/cwl/arvados_cwl/runner.py
@@ -1,15 +1,21 @@
import os
import urlparse
from functools import partial
+import logging
+import json
from cwltool.draft2tool import CommandLineTool
import cwltool.workflow
from cwltool.process import get_feature, scandeps, adjustFiles
from cwltool.load_tool import fetch_document
+import arvados.collection
+
from .arvdocker import arv_docker_get_image
from .pathmapper import ArvPathMapper
+logger = logging.getLogger('arvados.cwl-runner')
+
class Runner(object):
def __init__(self, runner, tool, job_order, enable_reuse):
self.arvrunner = runner
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