[ARVADOS] updated: 5f82d0d9a0381605cdccfa1cfacaf670f139f47b

Git user git at public.curoverse.com
Mon Jun 13 16:28:50 EDT 2016


Summary of changes:
 sdk/cwl/arvados_cwl/runner.py | 6 ++++++
 1 file changed, 6 insertions(+)

       via  5f82d0d9a0381605cdccfa1cfacaf670f139f47b (commit)
      from  0fb601b385db9c25d083cb7fd058cafe57bb76ac (commit)

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commit 5f82d0d9a0381605cdccfa1cfacaf670f139f47b
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date:   Mon Jun 13 16:28:45 2016 -0400

    8442: import fixups

diff --git a/sdk/cwl/arvados_cwl/runner.py b/sdk/cwl/arvados_cwl/runner.py
index 0cc23ab..f754348 100644
--- a/sdk/cwl/arvados_cwl/runner.py
+++ b/sdk/cwl/arvados_cwl/runner.py
@@ -1,15 +1,21 @@
 import os
 import urlparse
 from functools import partial
+import logging
+import json
 
 from cwltool.draft2tool import CommandLineTool
 import cwltool.workflow
 from cwltool.process import get_feature, scandeps, adjustFiles
 from cwltool.load_tool import fetch_document
 
+import arvados.collection
+
 from .arvdocker import arv_docker_get_image
 from .pathmapper import ArvPathMapper
 
+logger = logging.getLogger('arvados.cwl-runner')
+
 class Runner(object):
     def __init__(self, runner, tool, job_order, enable_reuse):
         self.arvrunner = runner

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