[ARVADOS] updated: 8d80d7aa5900da7e9ef1f2a8b65db119f0959267

[Git user]

Summary of changes:
 sdk/cwl/arvados_cwl/__init__.py | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

       via  8d80d7aa5900da7e9ef1f2a8b65db119f0959267 (commit)
       via  d94634379660ba4ef9d1a8150e2f6dbc544e590d (commit)
      from  3381f02d88d4a35ba63226d76cba674aacfbe140 (commit)

Those revisions listed above that are new to this repository have
not appeared on any other notification email; so we list those
revisions in full, below.


commit 8d80d7aa5900da7e9ef1f2a8b65db119f0959267
Merge: 3381f02 d946343
Author: radhika <radhika at curoverse.com>
Date:   Thu Jul 28 14:27:27 2016 -0400

    refs #9552
    Merge branch '9552-compute-checksum-flag'


commit d94634379660ba4ef9d1a8150e2f6dbc544e590d
Author: radhika <radhika at curoverse.com>
Date:   Thu Jul 28 13:36:26 2016 -0400

    9552: add compute-checksum flag to arvados-cwl-runner

diff --git a/sdk/cwl/arvados_cwl/__init__.py b/sdk/cwl/arvados_cwl/__init__.py
index 4bff093..ce1cc26 100644
--- a/sdk/cwl/arvados_cwl/__init__.py
+++ b/sdk/cwl/arvados_cwl/__init__.py
@@ -127,7 +127,7 @@ class ArvCwlRunner(object):
         kwargs["use_container"] = True
         kwargs["tmpdir_prefix"] = "tmp"
         kwargs["on_error"] = "continue"
-        kwargs["compute_checksum"] = False
+        kwargs["compute_checksum"] = kwargs.get("compute_checksum")
 
         if self.work_api == "containers":
             kwargs["outdir"] = "/var/spool/cwl"
@@ -291,6 +291,10 @@ def arg_parser():  # type: () -> argparse.ArgumentParser
                         default=None, dest="work_api",
                         help="Select work submission API, one of 'jobs' or 'containers'.")
 
+    parser.add_argument("--compute-checksum", action="store_true", default=False,
+                        help="Compute checksum of contents while collecting outputs",
+                        dest="compute_checksum")
+
     parser.add_argument("workflow", type=str, nargs="?", default=None, help="The workflow to execute")
     parser.add_argument("job_order", nargs=argparse.REMAINDER, help="The input object to the workflow.")
 

-----------------------------------------------------------------------


hooks/post-receive
--