[ARVADOS-DEV] updated: f4c3fb1b735f1820f5b2b410b13e8ae35765b54f

[Git user]

Summary of changes:
 jenkins/run-cwl-test.sh | 128 ++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 128 insertions(+)
 create mode 100755 jenkins/run-cwl-test.sh

       via  f4c3fb1b735f1820f5b2b410b13e8ae35765b54f (commit)
      from  b2a667483295c7dd2d694cef111faeece6345180 (commit)

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commit f4c3fb1b735f1820f5b2b410b13e8ae35765b54f
Author: Nico Cesar <nico at curoverse.com>
Date:   Sun Jul 17 16:29:51 2016 -0400

    added run-cwl-test.sh  for running cwl-test on the clusters
    
    refs #9459

diff --git a/jenkins/run-cwl-test.sh b/jenkins/run-cwl-test.sh
new file mode 100755
index 0000000..5456883
--- /dev/null
+++ b/jenkins/run-cwl-test.sh
@@ -0,0 +1,128 @@
+#!/bin/bash
+
+DEBUG=0
+SSH_PORT=22
+
+function usage {
+    echo >&2
+    echo >&2 "usage: $0 [options] <identifier>"
+    echo >&2
+    echo >&2 "   <identifier>                 Arvados cluster name"
+    echo >&2
+    echo >&2 "$0 options:"
+    echo >&2 "  -p, --port <ssh port>         SSH port to use (default 22)"
+    echo >&2 "  -d, --debug                   Enable debug output"
+    echo >&2 "  -h, --help                    Display this help and exit"
+}
+
+# NOTE: This requires GNU getopt (part of the util-linux package on Debian-based distros).
+TEMP=`getopt -o hdp: \
+    --long help,debug,port: \
+    -n "$0" -- "$@"`
+
+if [ $? != 0 ] ; then echo "Use -h for help"; exit 1 ; fi
+# Note the quotes around `$TEMP': they are essential!
+eval set -- "$TEMP"
+
+while [ $# -ge 1 ]
+do
+    case $1 in
+        -p | --port)
+            SSH_PORT="$2"; shift 2
+            ;;
+        -d | --debug)
+            DEBUG=1
+            shift
+            ;;
+        --)
+            shift
+            break
+            ;;
+        *)
+            usage
+            exit 1
+            ;;
+    esac
+done
+
+IDENTIFIER=$1
+
+if [[ "$IDENTIFIER" == '' ]]; then
+  usage
+  exit 1
+fi
+
+EXITCODE=0
+
+COLUMNS=80
+
+PUPPET_AGENT='
+now() { date +%s; }
+let endtime="$(now) + 600"
+while [ "$endtime" -gt "$(now)" ]; do
+    puppet agent --test --detailed-exitcodes
+    agent_exitcode=$?
+    if [ 0 = "$agent_exitcode" ] || [ 2 = "$agent_exitcode" ]; then
+        break
+    else
+        sleep 10s
+    fi
+done
+exit ${agent_exitcode:-99}
+'
+
+title () {
+  date=`date +'%Y-%m-%d %H:%M:%S'`
+  printf "$date $1\n"
+}
+
+function run_command() {
+  node=$1
+  return_var=$2
+  command=$3
+
+  title "Running '$command' on $node"
+  TMP_FILE=`mktemp`
+  if [[ "$DEBUG" != "0" ]]; then
+    ssh -t -p$SSH_PORT -o "StrictHostKeyChecking no" -o "ConnectTimeout 125" root@$node -C "$command" | tee $TMP_FILE
+  else
+    ssh -t -p$SSH_PORT -o "StrictHostKeyChecking no" -o "ConnectTimeout 125" root@$node -C "$command" > $TMP_FILE 2>&1
+  fi
+
+  ECODE=$?
+  RESULT=$(cat $TMP_FILE)
+
+  if [[ "$ECODE" != "255" && "$ECODE" != "0"  ]]; then
+    # Ssh exists 255 if the connection timed out. Just ignore that, it's possible that this node is
+    #   a shell node that is down.
+    title "ERROR running command on $node: exit code $ECODE"
+    if [[ "$DEBUG" == "0" ]]; then
+      title "Command output follows:"
+      echo $RESULT
+    fi
+  fi
+  if [[ "$ECODE" == "255" ]]; then
+    title "Connection timed out"
+    ECODE=0
+  fi
+  rm -f $TMP_FILE
+  eval "$return_var=$ECODE"
+}
+
+title "Loading ARVADOS_API_HOST and ARVADOS_API_TOKEN"
+if [[ -f "$HOME/.config/arvados/$IDENTIFIER.arvadosapi.com.conf" ]]; then
+  . $HOME/.config/arvados/$IDENTIFIER.arvadosapi.com.conf
+else
+  title "WARNING: $HOME/.config/arvados/$IDENTIFIER.arvadosapi.com.conf not found."
+fi
+if [[ "$ARVADOS_API_HOST" == "" ]] || [[ "$ARVADOS_API_TOKEN" == "" ]]; then
+  title "ERROR: ARVADOS_API_HOST and/or ARVADOS_API_TOKEN environment variables are not set."
+  exit 1
+fi
+
+## FIXME: add a git clone if common-workflow-language dir isn't there
+
+run_command shell.$IDENTIFIER ECODE "cd common-workflow-language; git pull; ARVADOS_API_HOST=$ARVADOS_API_HOST ARVADOS_API_TOKEN=$ARVADOS_API_TOKEN  ./run_test.sh -n1-69,71-73 "
+
+exit $ECODE
+

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