[ARVADOS] updated: 931236cc8c9bea9c796aed23c1636abce3ee4534

Git user git at public.curoverse.com
Fri Jul 15 14:30:52 EDT 2016


Summary of changes:
 doc/_config.yml                                    |   9 +-
 doc/_includes/_pipeline_deprecation_notice.liquid  |   3 +
 doc/sdk/cli/install.html.textile.liquid            |  26 +-
 doc/sdk/python/sdk-python.html.textile.liquid      |   6 +-
 doc/user/cwl/bwa-mem/bwa-mem-input-local.yml       |  14 +
 doc/user/cwl/bwa-mem/bwa-mem-input.yml             |  14 +
 doc/user/cwl/bwa-mem/bwa-mem-template.yml          |   4 +
 doc/user/cwl/bwa-mem/bwa-mem.cwl                   |  45 ++++
 doc/user/cwl/cwl-runner.html.textile.liquid        | 297 +++++++++++++++++++++
 .../vm-login-with-webshell.html.textile.liquid     |   2 +-
 doc/user/topics/arv-copy.html.textile.liquid       |  10 +-
 .../crunch-tools-overview.html.textile.liquid      |   2 +
 ...nning-pipeline-command-line.html.textile.liquid |   2 +-
 .../topics/tutorial-parallel.html.textile.liquid   |   2 +
 .../running-external-program.html.textile.liquid   |   4 +-
 .../tutorial-firstscript.html.textile.liquid       |   2 +
 .../tutorial-submit-job.html.textile.liquid        |   2 +
 17 files changed, 421 insertions(+), 23 deletions(-)
 create mode 100644 doc/_includes/_pipeline_deprecation_notice.liquid
 create mode 100755 doc/user/cwl/bwa-mem/bwa-mem-input-local.yml
 create mode 100755 doc/user/cwl/bwa-mem/bwa-mem-input.yml
 create mode 100644 doc/user/cwl/bwa-mem/bwa-mem-template.yml
 create mode 100755 doc/user/cwl/bwa-mem/bwa-mem.cwl
 create mode 100644 doc/user/cwl/cwl-runner.html.textile.liquid

       via  931236cc8c9bea9c796aed23c1636abce3ee4534 (commit)
       via  de4d6cb4a482d07fbeb2c73366e6717441a26e17 (commit)
       via  f02f9915ecccc36bc13ad7ae34567be26e55a339 (commit)
       via  3a0aa1db801154916f50b1b299d5100945a3e1df (commit)
       via  f17319c645b30aaf976000134a18433d3a8adb19 (commit)
       via  077afbcc57d173a47ed1c799a480ba7728ee22bc (commit)
       via  1d40c96c8688cd6f74eab1c7dffa857d91be31c4 (commit)
       via  b827b267317419039e436dfa3b8c302b9ca095b8 (commit)
       via  9e3cf124be0a38ae835ab934077c8febf4e2daba (commit)
       via  cc79dd8213409bc57dd731687c9f67c9a84808bb (commit)
       via  3f69ccbaaa9b9c16bd0ea2c063aa3a7aa91e6b84 (commit)
       via  51b150baaa5148228156af65ccd6676e65935c41 (commit)
       via  78baf73e784e01fb44d1b16aefaf6e295bb4d5b4 (commit)
      from  5cf55ab0cfe55cbd803b61736276044f7008bfa4 (commit)

Those revisions listed above that are new to this repository have
not appeared on any other notification email; so we list those
revisions in full, below.


commit 931236cc8c9bea9c796aed23c1636abce3ee4534
Merge: 5cf55ab de4d6cb
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date:   Fri Jul 15 14:30:50 2016 -0400

    Merge branch '9369-arv-cwl-docs' closes #9369


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