[ARVADOS] updated: 5cf55ab0cfe55cbd803b61736276044f7008bfa4

[Git user]

Summary of changes:
 build/run-build-packages.sh       |  2 +-
 crunch_scripts/cwl-runner         | 26 +++++++++++++++-----------
 sdk/cwl/arvados_cwl/__init__.py   |  6 ++++++
 sdk/cwl/arvados_cwl/arvjob.py     |  8 ++++----
 sdk/cwl/arvados_cwl/fsaccess.py   |  1 -
 sdk/cwl/arvados_cwl/pathmapper.py | 14 ++++++++++++++
 sdk/cwl/arvados_cwl/runner.py     | 20 +++++++++++++-------
 sdk/cwl/setup.py                  |  2 +-
 8 files changed, 54 insertions(+), 25 deletions(-)

       via  5cf55ab0cfe55cbd803b61736276044f7008bfa4 (commit)
       via  0d4726056080f8c865135e0f576ccc15d4f388b9 (commit)
       via  72f92ad04b77bf781f27ff355b4cc91d7f36ec0f (commit)
       via  7a041a2b0068e02bbb9743407d915522a1e2d1dc (commit)
       via  133c1473a92a3f4d5d49c0b4e94a4656f913a3e8 (commit)
       via  4e78269414737d1e693dad494e796ef46de1ea8a (commit)
       via  c211862a0f01b5073f59621ea3fe395d7f53390c (commit)
       via  5605f8a67514037f5e7ca0e7780b23d6772317e4 (commit)
       via  ec2af1a4d13bbbdeedb83295d6177f7317cd8302 (commit)
      from  bb5430392e6af88d2a65fa060d9069630a4a7dc2 (commit)

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commit 5cf55ab0cfe55cbd803b61736276044f7008bfa4
Merge: bb54303 0d47260
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date:   Fri Jul 15 13:11:07 2016 -0400

    Merge branch '9570-cwl-runner-fixes' closes #9570 (again)


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