[ARVADOS] updated: ebc1f7caa608dcba2a1d9f5a33d8fab7ffc80fa2
Git user
git at public.curoverse.com
Wed Dec 28 11:55:18 EST 2016
Summary of changes:
sdk/cwl/arvados_cwl/arvcontainer.py | 3 +++
sdk/cwl/arvados_cwl/crunch_script.py | 2 +-
sdk/cwl/arvados_cwl/runner.py | 2 +-
3 files changed, 5 insertions(+), 2 deletions(-)
via ebc1f7caa608dcba2a1d9f5a33d8fab7ffc80fa2 (commit)
from 598ebc54f5d611ca57e281b359d6c26b297562b5 (commit)
Those revisions listed above that are new to this repository have
not appeared on any other notification email; so we list those
revisions in full, below.
commit ebc1f7caa608dcba2a1d9f5a33d8fab7ffc80fa2
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date: Wed Dec 28 11:13:56 2016 -0500
10497: Increase number of log lines shown by runner. Turn off 'debug' mode on crunch script.
diff --git a/sdk/cwl/arvados_cwl/arvcontainer.py b/sdk/cwl/arvados_cwl/arvcontainer.py
index a0c2e59..d6e3098 100644
--- a/sdk/cwl/arvados_cwl/arvcontainer.py
+++ b/sdk/cwl/arvados_cwl/arvcontainer.py
@@ -252,6 +252,9 @@ class RunnerContainer(Runner):
if self.output_tags:
command.append("--output-tags=" + self.output_tags)
+ if kwargs.get("debug"):
+ command.append("--debug")
+
if self.enable_reuse:
command.append("--enable-reuse")
else:
diff --git a/sdk/cwl/arvados_cwl/crunch_script.py b/sdk/cwl/arvados_cwl/crunch_script.py
index 570f686..4b1b428 100644
--- a/sdk/cwl/arvados_cwl/crunch_script.py
+++ b/sdk/cwl/arvados_cwl/crunch_script.py
@@ -88,7 +88,7 @@ def run():
args.project_uuid = arvados.current_job()["owner_uuid"]
args.enable_reuse = enable_reuse
args.submit = False
- args.debug = True
+ args.debug = False
args.quiet = False
args.ignore_docker_for_reuse = False
args.basedir = os.getcwd()
diff --git a/sdk/cwl/arvados_cwl/runner.py b/sdk/cwl/arvados_cwl/runner.py
index eaa69c4..144fd53 100644
--- a/sdk/cwl/arvados_cwl/runner.py
+++ b/sdk/cwl/arvados_cwl/runner.py
@@ -225,7 +225,7 @@ class Runner(object):
api_client=self.arvrunner.api,
keep_client=self.arvrunner.keep_client,
num_retries=self.arvrunner.num_retries)
- done.logtail(logc, logger, "%s error log:" % self.arvrunner.label(self))
+ done.logtail(logc, logger, "%s error log:" % self.arvrunner.label(self), maxlen=40)
self.final_output = record["output"]
outc = arvados.collection.CollectionReader(self.final_output,
-----------------------------------------------------------------------
hooks/post-receive
--
More information about the arvados-commits
mailing list