[ARVADOS] updated: 53468cf5e609c4456d1bfd24aeb74c326ff6a8b7

[Git user]

Summary of changes:
 sdk/cwl/arvados_cwl/arvjob.py        | 5 +++--
 sdk/cwl/arvados_cwl/crunch_script.py | 1 +
 sdk/dev-jobs.dockerfile              | 2 +-
 3 files changed, 5 insertions(+), 3 deletions(-)

       via  53468cf5e609c4456d1bfd24aeb74c326ff6a8b7 (commit)
       via  5fe2a0ab78c82b67b92434596d554bedda1d4259 (commit)
       via  a092ab09fab941057e5cc44d93886676d542bdd6 (commit)
      from  ad0712ccdb7ad3d01ab4fc0d4f1a15dc7443b18a (commit)

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commit 53468cf5e609c4456d1bfd24aeb74c326ff6a8b7
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date:   Mon Dec 19 09:42:31 2016 -0500

    Adjust arvados repo minimum script versions for job dispatch. no issue #

diff --git a/sdk/cwl/arvados_cwl/arvjob.py b/sdk/cwl/arvados_cwl/arvjob.py
index aba2f21..69666a8 100644
--- a/sdk/cwl/arvados_cwl/arvjob.py
+++ b/sdk/cwl/arvados_cwl/arvjob.py
@@ -121,7 +121,7 @@ class ArvadosJob(object):
                         "script": "crunchrunner",
                         "repository": "arvados",
                         "script_version": "master",
-                        "minimum_script_version": "9e5b98e8f5f4727856b53447191f9c06e3da2ba6",
+                        "minimum_script_version": "a3f2cb186e437bfce0031b024b2157b73ed2717d",
                         "script_parameters": {"tasks": [script_parameters]},
                         "runtime_constraints": runtime_constraints
                     },
@@ -247,7 +247,8 @@ class RunnerJob(Runner):
 
         return {
             "script": "cwl-runner",
-            "script_version": __version__,
+            "script_version": "master",
+            "minimum_script_version": "570509ab4d2ef93d870fd2b1f2eab178afb1bad9",
             "repository": "arvados",
             "script_parameters": self.job_order,
             "runtime_constraints": {

commit 5fe2a0ab78c82b67b92434596d554bedda1d4259
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date:   Fri Dec 16 16:58:19 2016 -0500

    Fix dev build of arvados/jobs image to avoid installing versions of
    pyasn1-modules incompatible with pyasn1.  no issue #

diff --git a/sdk/dev-jobs.dockerfile b/sdk/dev-jobs.dockerfile
index bd80a0c..38fefd0 100644
--- a/sdk/dev-jobs.dockerfile
+++ b/sdk/dev-jobs.dockerfile
@@ -14,7 +14,7 @@ MAINTAINER Ward Vandewege <ward at curoverse.com>
 
 ENV DEBIAN_FRONTEND noninteractive
 
-RUN apt-get update -q && apt-get install -qy git python-pip python-virtualenv python-dev libcurl4-gnutls-dev libgnutls28-dev nodejs
+RUN apt-get update -q && apt-get install -qy git python-pip python-virtualenv python-dev libcurl4-gnutls-dev libgnutls28-dev nodejs python-pyasn1-modules
 
 RUN pip install -U setuptools
 

commit a092ab09fab941057e5cc44d93886676d542bdd6
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date:   Mon Dec 19 09:25:34 2016 -0500

    Fix crunch_script.py to pass name arg, refs #10681

diff --git a/sdk/cwl/arvados_cwl/crunch_script.py b/sdk/cwl/arvados_cwl/crunch_script.py
index 849b177..6f84d68 100644
--- a/sdk/cwl/arvados_cwl/crunch_script.py
+++ b/sdk/cwl/arvados_cwl/crunch_script.py
@@ -90,6 +90,7 @@ def run():
         args.quiet = False
         args.ignore_docker_for_reuse = False
         args.basedir = os.getcwd()
+        args.name = None
         args.cwl_runner_job={"uuid": arvados.current_job()["uuid"], "state": arvados.current_job()["state"]}
         outputObj = runner.arv_executor(t, job_order_object, **vars(args))
     except Exception as e:

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