[ARVADOS] updated: 9ae893ba644bdaf67c63a812e8f8480fac24e2a8
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git at public.curoverse.com
Thu Aug 11 12:30:37 EDT 2016
Summary of changes:
sdk/cwl/arvados_cwl/arvjob.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
via 9ae893ba644bdaf67c63a812e8f8480fac24e2a8 (commit)
from 16eeca3890937e21e92893c077ffa8066cb5bd8f (commit)
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commit 9ae893ba644bdaf67c63a812e8f8480fac24e2a8
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date: Thu Aug 11 12:29:41 2016 -0400
9552: Set pipeline on the runner so it will marked as completed by ArvCwlRunner.output_callback
diff --git a/sdk/cwl/arvados_cwl/arvjob.py b/sdk/cwl/arvados_cwl/arvjob.py
index 0035597..9f11058 100644
--- a/sdk/cwl/arvados_cwl/arvjob.py
+++ b/sdk/cwl/arvados_cwl/arvjob.py
@@ -227,7 +227,7 @@ class RunnerJob(Runner):
logger.info("Submitted job %s", response["uuid"])
if kwargs.get("submit"):
- self.pipeline = self.arvrunner.api.pipeline_instances().create(
+ self.arvrunner.pipeline = self.arvrunner.api.pipeline_instances().create(
body={
"owner_uuid": self.arvrunner.project_uuid,
"name": shortname(self.tool.tool["id"]),
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