[ARVADOS] updated: 6e76e3322d66f609dabcd34c98cba34bd739e089

git at public.curoverse.com git at public.curoverse.com
Thu Oct 29 16:35:52 EDT 2015


Summary of changes:
 README                                             |   4 +-
 apps/workbench/Gemfile.lock                        |  15 +-
 apps/workbench/app/assets/javascripts/add_group.js |  44 ++
 apps/workbench/app/models/group.rb                 |   4 +
 apps/workbench/app/models/keep_disk.rb             |   2 +-
 apps/workbench/app/models/keep_service.rb          |   2 +-
 apps/workbench/app/models/link.rb                  |   4 +
 apps/workbench/app/models/node.rb                  |   2 +-
 apps/workbench/app/models/user.rb                  |   4 +
 apps/workbench/app/models/virtual_machine.rb       |   7 +-
 .../_getting_started_popup.html.erb                |   2 +-
 .../app/views/users/_add_group_modal.html.erb      |  27 ++
 .../workbench/app/views/users/_show_admin.html.erb |   9 +-
 .../test/integration/application_layout_test.rb    |  16 +-
 apps/workbench/test/integration/errors_test.rb     |  12 -
 apps/workbench/test/integration/users_test.rb      |  22 +
 .../test/integration/virtual_machines_test.rb      |  14 -
 doc/_config.yml                                    |   1 +
 doc/_includes/_run_command_simple_example.liquid   |  15 +-
 doc/_includes/_ssh_addkey.liquid                   |   2 +-
 .../_tutorial_bwa_sortsam_pipeline.liquid          |   2 +-
 doc/api/schema/Job.html.textile.liquid             |   2 +-
 doc/index.html.liquid                              |   2 +-
 ...onfigure-azure-blob-storage.html.textile.liquid |  62 +++
 doc/install/install-keepstore.html.textile.liquid  |  63 ++-
 doc/install/install-sso.html.textile.liquid        |   3 +-
 .../ssh-access-unix.html.textile.liquid            |   2 +-
 .../ssh-access-windows.html.textile.liquid         |   6 +-
 .../vm-login-with-webshell.html.textile.liquid     |   2 +-
 doc/user/index.html.textile.liquid                 |   4 +-
 doc/user/topics/arv-docker.html.textile.liquid     |   2 +-
 ...tutorial-pipeline-workbench.html.textile.liquid |   6 +-
 sdk/cli/bin/crunch-job                             |  59 ++-
 sdk/go/arvadosclient/arvadosclient_test.go         |   2 +-
 sdk/go/arvadostest/run_servers.go                  |  22 +-
 sdk/go/crunchrunner/crunchrunner.go                | 356 +++++++++++++++++
 sdk/go/crunchrunner/crunchrunner_test.go           | 445 +++++++++++++++++++++
 sdk/go/crunchrunner/upload.go                      | 217 ++++++++++
 sdk/go/crunchrunner/upload_test.go                 | 140 +++++++
 sdk/go/keepclient/keepclient.go                    |  46 ++-
 sdk/go/keepclient/keepclient_test.go               |  68 +++-
 sdk/go/keepclient/support.go                       |  67 ++--
 sdk/python/arvados/__init__.py                     |  65 ++-
 sdk/python/arvados/api.py                          |  11 +
 sdk/python/arvados/commands/run.py                 |   4 +-
 sdk/python/arvados/keep.py                         |  33 +-
 sdk/python/tests/arvados_testutil.py               |   4 +
 sdk/python/tests/nginx.conf                        |   2 +-
 sdk/python/tests/run_test_server.py                |  21 +-
 sdk/python/tests/test_api.py                       |  86 ++--
 sdk/python/tests/test_keep_client.py               | 201 ++++++----
 sdk/python/tests/test_retry_job_helpers.py         | 105 +++++
 services/api/Gemfile                               |   2 +-
 services/api/config/application.yml.example        |   4 +-
 services/arv-git-httpd/git_handler_test.go         |   6 +-
 services/datamanager/datamanager_test.go           |   4 +-
 services/keepproxy/keepproxy.go                    |  14 +-
 services/keepproxy/keepproxy_test.go               | 127 +++++-
 services/keepstore/pull_worker_integration_test.go |   2 +-
 .../arvnodeman/computenode/dispatch/slurm.py       |  14 +-
 .../tests/test_computenode_dispatch_slurm.py       |   9 +
 tools/keep-rsync/keep-rsync.go                     |  58 +--
 tools/keep-rsync/keep-rsync_test.go                |  99 ++++-
 63 files changed, 2312 insertions(+), 345 deletions(-)
 create mode 100644 apps/workbench/app/assets/javascripts/add_group.js
 create mode 100644 apps/workbench/app/views/users/_add_group_modal.html.erb
 create mode 100644 doc/install/configure-azure-blob-storage.html.textile.liquid
 create mode 100644 sdk/go/crunchrunner/crunchrunner.go
 create mode 100644 sdk/go/crunchrunner/crunchrunner_test.go
 create mode 100644 sdk/go/crunchrunner/upload.go
 create mode 100644 sdk/go/crunchrunner/upload_test.go
 create mode 100644 sdk/python/tests/test_retry_job_helpers.py

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Those revisions listed above that are new to this repository have
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commit 6e76e3322d66f609dabcd34c98cba34bd739e089
Merge: e3a1bf0 d70d9b2
Author: Tom Clegg <tom at curoverse.com>
Date:   Thu Oct 29 16:31:37 2015 -0400

    5824: Merge branch 'master' into 5824-keep-web

diff --cc doc/_config.yml
index 6d0bdb2,75cb997..2f37f5a
--- a/doc/_config.yml
+++ b/doc/_config.yml
@@@ -153,8 -153,8 +153,9 @@@ navbar
        - install/install-shell-server.html.textile.liquid
        - install/create-standard-objects.html.textile.liquid
        - install/install-keepstore.html.textile.liquid
+       - install/configure-azure-blob-storage.html.textile.liquid
        - install/install-keepproxy.html.textile.liquid
 +      #- install/install-keep-web.html.textile.liquid
        - install/install-crunch-dispatch.html.textile.liquid
        - install/install-compute-node.html.textile.liquid
      - Helpful hints:

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