[ARVADOS] updated: faefe8fc192886b35be484d5a6bb9f5a6a87b53f

[git at public.curoverse.com]

Summary of changes:
 crunch_scripts/crunchutil/vwd.py | 6 ++++++
 1 file changed, 6 insertions(+)

       via  faefe8fc192886b35be484d5a6bb9f5a6a87b53f (commit)
      from  27616fe74103c079a84ac34b2adb83f1952c5772 (commit)

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commit faefe8fc192886b35be484d5a6bb9f5a6a87b53f
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date:   Mon May 18 14:50:44 2015 -0400

    3198: VWD syncs collection before loading from API server.

diff --git a/crunch_scripts/crunchutil/vwd.py b/crunch_scripts/crunchutil/vwd.py
index ca4116d..0ae1c46 100644
--- a/crunch_scripts/crunchutil/vwd.py
+++ b/crunch_scripts/crunchutil/vwd.py
@@ -73,6 +73,12 @@ def checkin(target_dir):
                     if pdh is not None:
                         # 2. load collection
                         if pdh not in collections:
+                            # 2.1 make sure it is flushed (see #5787 note 11)
+                            fd = os.open(real[0], os.O_RDONLY)
+                            os.fsync(fd)
+                            os.close(fd)
+
+                            # 2.2 get collection from API server
                             collections[pdh] = arvados.collection.CollectionReader(pdh,
                                                                                    api_client=outputcollection._my_api(),
                                                                                    keep_client=outputcollection._my_keep(),

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