[ARVADOS] updated: 2013ac2400a36ea6154e84e1991944afc536c9a0
git at public.curoverse.com
git at public.curoverse.com
Sun Mar 29 18:36:30 EDT 2015
Summary of changes:
doc/_includes/_tutorial_submit_job.liquid | 2 +-
doc/api/methods/jobs.html.textile.liquid | 14 +++++++-------
doc/api/schema/PipelineTemplate.html.textile.liquid | 16 ++++++++--------
doc/user/topics/tutorial-parallel.html.textile.liquid | 2 +-
.../tutorials/tutorial-submit-job.html.textile.liquid | 6 +++---
5 files changed, 20 insertions(+), 20 deletions(-)
via 2013ac2400a36ea6154e84e1991944afc536c9a0 (commit)
from dd2749162fb95d7a975d664baa01d24f529bd2ae (commit)
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commit 2013ac2400a36ea6154e84e1991944afc536c9a0
Author: Brett Smith <brett at curoverse.com>
Date: Sun Mar 29 18:36:28 2015 -0400
4253: Fixup documentation.
diff --git a/doc/_includes/_tutorial_submit_job.liquid b/doc/_includes/_tutorial_submit_job.liquid
index 57063b3..3ea7602 100644
--- a/doc/_includes/_tutorial_submit_job.liquid
+++ b/doc/_includes/_tutorial_submit_job.liquid
@@ -2,7 +2,7 @@
"name":"My md5 pipeline",
"components":{
"do_hash":{
- "repository":"$USER",
+ "repository":"$USER/$USER",
"script":"hash.py",
"script_version":"master",
"runtime_constraints":{
diff --git a/doc/api/methods/jobs.html.textile.liquid b/doc/api/methods/jobs.html.textile.liquid
index ac68129..b57858e 100644
--- a/doc/api/methods/jobs.html.textile.liquid
+++ b/doc/api/methods/jobs.html.textile.liquid
@@ -76,7 +76,7 @@ Run the script "crunch_scripts/hash.py" in the repository "you" using the "maste
{
"job": {
"script": "hash.py",
- "repository": "<b>you</b>",
+ "repository": "<b>you</b>/<b>you</b>",
"script_version": "master",
"script_parameters": {
"input": "c1bad4b39ca5a924e481008009d94e32+210"
@@ -92,7 +92,7 @@ Run using exactly the version "d00220fb38d4b85ca8fc28a8151702a2b9d1dec5". Arvado
{
"job": {
"script": "hash.py",
- "repository": "<b>you</b>",
+ "repository": "<b>you</b>/<b>you</b>",
"script_version": "d00220fb38d4b85ca8fc28a8151702a2b9d1dec5",
"script_parameters": {
"input": "c1bad4b39ca5a924e481008009d94e32+210"
@@ -108,7 +108,7 @@ Arvados should re-use a previous job if the "script_version" of the previous job
{
"job": {
"script": "hash.py",
- "repository": "<b>you</b>",
+ "repository": "<b>you</b>/<b>you</b>",
"script_version": "master",
"script_parameters": {
"input": "c1bad4b39ca5a924e481008009d94e32+210"
@@ -126,27 +126,27 @@ The same behavior, using filters:
{
"job": {
"script": "hash.py",
- "repository": "<b>you</b>",
+ "repository": "<b>you</b>/<b>you</b>",
"script_version": "master",
"script_parameters": {
"input": "c1bad4b39ca5a924e481008009d94e32+210"
}
},
"filters": [["script", "=", "hash.py"],
- ["repository", "=", "<b>you</b>"],
+ ["repository", "=", "<b>you</b>/<b>you</b>"],
["script_version", "in git", "earlier_version_tag"],
["script_version", "not in git", "blacklisted_version_tag"]],
"find_or_create": true
}
</pre></notextile>
-Run the script "crunch_scripts/monte-carlo.py" in the repository "you" using the current "master" commit. Because it is marked as "nondeterministic", this job will not be considered as a suitable candidate for future job submissions that use the "find_or_create" feature.
+Run the script "crunch_scripts/monte-carlo.py" in the repository "you/you" using the current "master" commit. Because it is marked as "nondeterministic", this job will not be considered as a suitable candidate for future job submissions that use the "find_or_create" feature.
<notextile><pre>
{
"job": {
"script": "monte-carlo.py",
- "repository": "<b>you</b>",
+ "repository": "<b>you</b>/<b>you</b>",
"script_version": "master",
"nondeterministic": true,
"script_parameters": {
diff --git a/doc/api/schema/PipelineTemplate.html.textile.liquid b/doc/api/schema/PipelineTemplate.html.textile.liquid
index 2b215c2..444960a 100644
--- a/doc/api/schema/PipelineTemplate.html.textile.liquid
+++ b/doc/api/schema/PipelineTemplate.html.textile.liquid
@@ -51,7 +51,7 @@ This is a pipeline named "Filter MD5 hash values" with two components, "do_hash"
"components": {
"do_hash": {
"script": "hash.py",
- "repository": "<b>you</b>",
+ "repository": "<b>you</b>/<b>you</b>",
"script_version": "master",
"script_parameters": {
"input": {
@@ -64,7 +64,7 @@ This is a pipeline named "Filter MD5 hash values" with two components, "do_hash"
},
"filter": {
"script": "0-filter.py",
- "repository": "<b>you</b>",
+ "repository": "<b>you</b>/<b>you</b>",
"script_version": "master",
"script_parameters": {
"input": {
@@ -84,13 +84,13 @@ This pipeline consists of three components. The components "thing1" and "thing2
"components": {
"cat_in_the_hat": {
"script": "cat.py",
- "repository": "<b>you</b>",
+ "repository": "<b>you</b>/<b>you</b>",
"script_version": "master",
"script_parameters": { }
},
"thing1": {
"script": "thing1.py",
- "repository": "<b>you</b>",
+ "repository": "<b>you</b>/<b>you</b>",
"script_version": "master",
"script_parameters": {
"input": {
@@ -100,7 +100,7 @@ This pipeline consists of three components. The components "thing1" and "thing2
},
"thing2": {
"script": "thing2.py",
- "repository": "<b>you</b>",
+ "repository": "<b>you</b>/<b>you</b>",
"script_version": "master",
"script_parameters": {
"input": {
@@ -120,19 +120,19 @@ This pipeline consists of three components. The component "cleanup" depends on
"components": {
"thing1": {
"script": "thing1.py",
- "repository": "<b>you</b>",
+ "repository": "<b>you</b>/<b>you</b>",
"script_version": "master",
"script_parameters": { }
},
"thing2": {
"script": "thing2.py",
- "repository": "<b>you</b>",
+ "repository": "<b>you</b>/<b>you</b>",
"script_version": "master",
"script_parameters": { }
},
"cleanup": {
"script": "cleanup.py",
- "repository": "<b>you</b>",
+ "repository": "<b>you</b>/<b>you</b>",
"script_version": "master",
"script_parameters": {
"mess1": {
diff --git a/doc/user/topics/tutorial-parallel.html.textile.liquid b/doc/user/topics/tutorial-parallel.html.textile.liquid
index 9be6103..7a430a9 100644
--- a/doc/user/topics/tutorial-parallel.html.textile.liquid
+++ b/doc/user/topics/tutorial-parallel.html.textile.liquid
@@ -40,7 +40,7 @@ You should now be able to run your new script using Crunch, with "script" referr
<pre><code>~/$USER/crunch_scripts$ <span class="userinput">cat >~/the_job <<EOF
{
"script": "concurrent-hash.py",
- "repository": "$USER",
+ "repository": "$USER/$USER",
"script_version": "master",
"script_parameters":
{
diff --git a/doc/user/tutorials/tutorial-submit-job.html.textile.liquid b/doc/user/tutorials/tutorial-submit-job.html.textile.liquid
index fc77e5c..7cc4b88 100644
--- a/doc/user/tutorials/tutorial-submit-job.html.textile.liquid
+++ b/doc/user/tutorials/tutorial-submit-job.html.textile.liquid
@@ -20,13 +20,13 @@ All Crunch scripts are managed through the Git revision control system. Before
~$ <span class="userinput">git config --global user.email $USER at example.com</span></code></pre>
</notextile>
-On the Arvados Workbench, navigate to "Code repositories":https://{{site.arvados_workbench_host}}/repositories. You should see a repository with your user name listed in the *name* column. Next to *name* is the column *push_url*. Copy the *push_url* value associated with your repository. This should look like <notextile><code>git at git.{{ site.arvados_api_host }}:$USER.git</code></notextile>.
+On the Arvados Workbench, navigate to "Code repositories":https://{{site.arvados_workbench_host}}/repositories. You should see a repository with your user name listed in the *name* column. Next to *name* is the column *push_url*. Copy the *push_url* value associated with your repository. This should look like <notextile><code>git at git.{{ site.arvados_api_host }}:$USER/$USER.git</code></notextile>.
Next, on the Arvados virtual machine, clone your Git repository:
<notextile>
<pre><code>~$ <span class="userinput">cd $HOME</span> # (or wherever you want to install)
-~$ <span class="userinput">git clone git at git.{{ site.arvados_api_host }}:$USER.git</span>
+~$ <span class="userinput">git clone git at git.{{ site.arvados_api_host }}:$USER/$USER.git</span>
Cloning into '$USER'...</code></pre>
</notextile>
@@ -84,7 +84,7 @@ Counting objects: 4, done.
Compressing objects: 100% (2/2), done.
Writing objects: 100% (4/4), 682 bytes, done.
Total 4 (delta 0), reused 0 (delta 0)
-To git at git.qr1hi.arvadosapi.com:$USER.git
+To git at git.qr1hi.arvadosapi.com:$USER/$USER.git
* [new branch] master -> master</code></pre>
</notextile>
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