[ARVADOS] updated: 04a8e038125c6ffa3c912ba6b1fd0b31af01e7ad

git at public.curoverse.com git at public.curoverse.com
Thu Jan 29 17:11:16 EST 2015


Summary of changes:
 .../app/controllers/projects_controller.rb         |   8 +-
 .../app/controllers/repositories_controller.rb     |   4 +-
 apps/workbench/app/controllers/users_controller.rb |   2 +-
 apps/workbench/app/models/repository.rb            |   7 +
 .../app/views/application/_choose.html.erb         |   7 +-
 .../jobs/_rerun_job_with_options_popup.html.erb    |  48 +++++
 .../app/views/jobs/_show_job_buttons.html.erb      |  30 +--
 apps/workbench/app/views/jobs/show.html.erb        |   3 +-
 .../app/views/users/_manage_repositories.html.erb  |   6 +
 apps/workbench/app/views/users/profile.html.erb    |   6 +-
 .../test/controllers/projects_controller_test.rb   |  27 ++-
 .../controllers/repositories_controller_test.rb    |  17 ++
 apps/workbench/test/integration/jobs_test.rb       |  41 ++++
 .../test/integration/pipeline_instances_test.rb    |  27 +--
 apps/workbench/test/integration/projects_test.rb   |   8 -
 .../test/integration/repositories_test.rb          |   9 +-
 .../test/integration/user_manage_account_test.rb   |  25 +++
 .../test/integration/user_profile_test.rb          |  10 +-
 apps/workbench/test/integration/websockets_test.rb |   4 +-
 apps/workbench/test/unit/repository_test.rb        |  18 ++
 doc/_config.yml                                    |   8 +
 doc/_includes/_navbar_top.liquid                   |   1 +
 doc/_layouts/default.html.liquid                   |   1 +
 doc/css/carousel-override.css                      |  25 +++
 doc/images/keyfeatures/chooseinputs.png            | Bin 0 -> 76641 bytes
 doc/images/keyfeatures/collectionpage.png          | Bin 0 -> 84533 bytes
 doc/images/keyfeatures/dashboard2.png              | Bin 0 -> 44396 bytes
 doc/images/keyfeatures/graph.png                   | Bin 0 -> 49127 bytes
 doc/images/keyfeatures/log.png                     | Bin 0 -> 135214 bytes
 doc/images/keyfeatures/provenance.png              | Bin 0 -> 67060 bytes
 doc/images/keyfeatures/rerun.png                   | Bin 0 -> 73314 bytes
 doc/images/keyfeatures/running2.png                | Bin 0 -> 56959 bytes
 doc/images/keyfeatures/shared.png                  | Bin 0 -> 62395 bytes
 doc/images/keyfeatures/webupload.png               | Bin 0 -> 88061 bytes
 doc/images/quickstart/1.png                        | Bin 0 -> 47239 bytes
 doc/images/quickstart/2.png                        | Bin 0 -> 74431 bytes
 doc/images/quickstart/3.png                        | Bin 0 -> 80668 bytes
 doc/images/quickstart/4.png                        | Bin 0 -> 66686 bytes
 doc/images/quickstart/5.png                        | Bin 0 -> 83038 bytes
 doc/images/quickstart/6.png                        | Bin 0 -> 98604 bytes
 doc/images/quickstart/7.png                        | Bin 0 -> 77820 bytes
 doc/images/uses/choosefiles.png                    | Bin 0 -> 75434 bytes
 doc/images/uses/gotohome.png                       | Bin 0 -> 76218 bytes
 doc/images/uses/rename.png                         | Bin 0 -> 77738 bytes
 doc/images/uses/share.png                          | Bin 0 -> 85695 bytes
 doc/images/uses/shared.png                         | Bin 0 -> 57235 bytes
 doc/images/uses/sharedsubdirs.png                  | Bin 0 -> 67642 bytes
 doc/images/uses/uploaddata.png                     | Bin 0 -> 85535 bytes
 doc/images/uses/uploading.png                      | Bin 0 -> 74365 bytes
 doc/index.html.liquid                              |  12 +-
 .../firstpipeline.html.textile.liquid              |  89 +++++++++
 .../getting_started/sharedata.html.textile.liquid  |  97 +++++++++
 doc/start/index.html.textile.liquid                | 128 ++++++++++++
 doc/start/index.html.textile.liquid.bkup           |  50 +++++
 docker/arv-web/apache2_foreground.sh               |   3 +-
 docker/build_tools/Makefile                        |   6 +
 sdk/cli/arvados-cli.gemspec                        |   2 +-
 sdk/cli/bin/arv                                    |  32 +--
 sdk/cli/bin/crunch-job                             |  19 +-
 sdk/python/arvados/events.py                       |  13 +-
 sdk/ruby/arvados.gemspec                           |   3 +-
 sdk/ruby/lib/arvados.rb                            |  31 +--
 sdk/ruby/lib/arvados/google_api_client.rb          |  55 +++++
 services/api/Gemfile                               |   3 +-
 services/api/Gemfile.lock                          |   6 +-
 .../api/app/controllers/application_controller.rb  |  15 +-
 .../arvados/v1/collections_controller.rb           |   6 +-
 .../controllers/arvados/v1/groups_controller.rb    |   2 +-
 .../arvados/v1/keep_disks_controller.rb            |   2 +-
 .../app/controllers/arvados/v1/nodes_controller.rb |   2 +-
 .../arvados/v1/repositories_controller.rb          |   8 +-
 .../controllers/arvados/v1/schema_controller.rb    |   2 +-
 .../app/controllers/arvados/v1/users_controller.rb |   2 +-
 .../arvados/v1/virtual_machines_controller.rb      |   2 +-
 .../api/app/controllers/database_controller.rb     |   2 +-
 services/api/app/models/arvados_model.rb           |  10 +-
 .../api/db/migrate/20141208185217_search_index.rb  |  10 +-
 ...0150122175935_no_description_in_search_index.rb |  30 +++
 services/api/db/structure.sql                      |  14 +-
 services/api/lib/josh_id.rb                        |   2 +-
 services/api/lib/kind_and_etag.rb                  |   4 +-
 services/api/test/fixtures/jobs.yml                |  30 +++
 services/api/test/fixtures/links.yml               |  14 ++
 services/api/test/fixtures/pipeline_instances.yml  |  31 +++
 services/api/test/fixtures/repositories.yml        |   5 +
 .../arvados/v1/collections_controller_test.rb      |   3 +
 services/api/test/performance/browsing_test.rb     |  12 --
 services/api/test/performance/links_index_test.rb  |  14 ++
 services/api/test/test_helper.rb                   |   2 +-
 services/api/test/unit/arvados_model_test.rb       |   2 +-
 services/api/test/unit/log_test.rb                 |  14 ++
 services/arv-web/arv-web.py                        | 222 ++++++++++++---------
 services/arv-web/sample-static-page/docker_image   |   2 +-
 services/crunchstat/crunchstat.go                  |  13 +-
 services/crunchstat/crunchstat_test.go             |  29 +++
 services/fuse/arvados_fuse/__init__.py             |   1 +
 96 files changed, 1098 insertions(+), 300 deletions(-)
 create mode 100644 apps/workbench/app/views/jobs/_rerun_job_with_options_popup.html.erb
 create mode 100644 apps/workbench/test/unit/repository_test.rb
 create mode 100644 doc/css/carousel-override.css
 create mode 100644 doc/images/keyfeatures/chooseinputs.png
 create mode 100644 doc/images/keyfeatures/collectionpage.png
 create mode 100644 doc/images/keyfeatures/dashboard2.png
 create mode 100644 doc/images/keyfeatures/graph.png
 create mode 100644 doc/images/keyfeatures/log.png
 create mode 100644 doc/images/keyfeatures/provenance.png
 create mode 100644 doc/images/keyfeatures/rerun.png
 create mode 100644 doc/images/keyfeatures/running2.png
 create mode 100644 doc/images/keyfeatures/shared.png
 create mode 100644 doc/images/keyfeatures/webupload.png
 create mode 100644 doc/images/quickstart/1.png
 create mode 100644 doc/images/quickstart/2.png
 create mode 100644 doc/images/quickstart/3.png
 create mode 100644 doc/images/quickstart/4.png
 create mode 100644 doc/images/quickstart/5.png
 create mode 100644 doc/images/quickstart/6.png
 create mode 100644 doc/images/quickstart/7.png
 create mode 100644 doc/images/uses/choosefiles.png
 create mode 100644 doc/images/uses/gotohome.png
 create mode 100644 doc/images/uses/rename.png
 create mode 100644 doc/images/uses/share.png
 create mode 100644 doc/images/uses/shared.png
 create mode 100644 doc/images/uses/sharedsubdirs.png
 create mode 100644 doc/images/uses/uploaddata.png
 create mode 100644 doc/images/uses/uploading.png
 create mode 100644 doc/start/getting_started/firstpipeline.html.textile.liquid
 create mode 100644 doc/start/getting_started/sharedata.html.textile.liquid
 create mode 100644 doc/start/index.html.textile.liquid
 create mode 100644 doc/start/index.html.textile.liquid.bkup
 create mode 100644 sdk/ruby/lib/arvados/google_api_client.rb
 create mode 100644 services/api/db/migrate/20150122175935_no_description_in_search_index.rb
 delete mode 100644 services/api/test/performance/browsing_test.rb
 create mode 100644 services/api/test/performance/links_index_test.rb

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commit 04a8e038125c6ffa3c912ba6b1fd0b31af01e7ad
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date:   Thu Jan 29 17:13:25 2015 -0500

    4904: Eliminate downtime switching collections.
    
    * Now re-uses CollectionDirectory and loads new collection contents instead of
    unmounting and remounting.  Now sends sighup instead of restarting Docker if
    the image is the same.  Almost no downtime switching collections unless Docker
    image changes as well.
    
    * Refactor into functions instead executing directly as a module.
    
    * Use arvados.arv-web logger

commit 1060cff7480331bcad2b4564e270922b2b3b1f94
Merge: b4fd2ab 2717e70
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date:   Thu Jan 29 10:08:31 2015 -0500

    Merge branch 'master' into 4904-arv-web

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