[ARVADOS] updated: 80b809aa535067a3a87115d19f26feb9b3f9cb60
git at public.curoverse.com
git at public.curoverse.com
Tue Jan 20 16:24:20 EST 2015
Summary of changes:
apps/workbench/Gemfile | 31 +-
apps/workbench/Gemfile.lock | 208 +++++----
.../app/assets/javascripts/angular_shim.js | 13 +
.../app/assets/javascripts/application.js | 10 +-
.../app/assets/javascripts/arvados_client.js | 101 +++++
apps/workbench/app/assets/javascripts/event_log.js | 312 ++++++++++++++
.../workbench/app/assets/javascripts/filterable.js | 14 +-
.../app/assets/javascripts/infinite_scroll.js | 8 +-
.../app/assets/javascripts/pipeline_instances.js | 43 +-
.../app/assets/javascripts/report_issue.js | 4 +-
.../app/assets/javascripts/select_modal.js | 11 +-
.../app/assets/javascripts/selection.js.erb | 239 +++--------
apps/workbench/app/assets/javascripts/tab_panes.js | 2 +-
.../app/assets/javascripts/upload_to_collection.js | 476 +++++++++++++++++++++
.../app/assets/stylesheets/application.css.scss | 13 +-
.../workbench/app/assets/stylesheets/jobs.css.scss | 5 +
.../workbench/app/assets/stylesheets/selection.css | 17 -
.../app/controllers/application_controller.rb | 94 ++--
.../app/controllers/collections_controller.rb | 20 +-
apps/workbench/app/controllers/jobs_controller.rb | 15 +
.../controllers/pipeline_instances_controller.rb | 22 +-
.../app/controllers/projects_controller.rb | 46 --
.../app/controllers/repositories_controller.rb | 12 +
.../workbench/app/controllers/search_controller.rb | 4 +-
apps/workbench/app/controllers/users_controller.rb | 1 -
.../app/controllers/virtual_machines_controller.rb | 3 -
.../helpers/api_client_authorizations_helper.rb | 2 -
apps/workbench/app/helpers/application_helper.rb | 75 +---
.../app/helpers/authorized_keys_helper.rb | 2 -
apps/workbench/app/helpers/groups_helper.rb | 2 -
apps/workbench/app/helpers/humans_helper.rb | 2 -
apps/workbench/app/helpers/job_tasks_helper.rb | 2 -
apps/workbench/app/helpers/keep_disks_helper.rb | 2 -
apps/workbench/app/helpers/links_helper.rb | 2 -
apps/workbench/app/helpers/logs_helper.rb | 2 -
apps/workbench/app/helpers/nodes_helper.rb | 2 -
apps/workbench/app/helpers/projects_helper.rb | 2 -
apps/workbench/app/helpers/provenance_helper.rb | 5 +-
apps/workbench/app/helpers/repositories_helper.rb | 2 -
apps/workbench/app/helpers/sessions_helper.rb | 2 -
apps/workbench/app/helpers/specimens_helper.rb | 2 -
apps/workbench/app/helpers/traits_helper.rb | 2 -
.../app/helpers/user_agreements_helper.rb | 2 -
apps/workbench/app/helpers/users_helper.rb | 2 -
apps/workbench/app/helpers/vcf_pipeline_helper.rb | 234 ----------
apps/workbench/app/helpers/version_helper.rb | 30 ++
.../app/helpers/virtual_machines_helper.rb | 2 -
apps/workbench/app/models/arvados_api_client.rb | 1 +
apps/workbench/app/models/collection.rb | 14 +-
.../views/application/_projects_tree_menu.html.erb | 50 +--
.../views/application/_report_issue_popup.html.erb | 14 +-
.../app/views/application/_show_recent.html.erb | 4 +-
.../_show_sharing.html.erb | 14 +-
.../views/application/report_issue_popup.js.erb | 8 +-
.../app/views/authorized_keys/_show_help.html.erb | 10 -
.../app/views/collections/_index_tbody.html.erb | 15 +-
.../app/views/collections/_sharing_button.html.erb | 36 +-
.../app/views/collections/_show_files.html.erb | 21 +-
.../app/views/collections/_show_recent.html.erb | 2 +-
.../app/views/collections/_show_upload.html.erb | 66 +++
apps/workbench/app/views/jobs/_show_log.html.erb | 8 +-
.../app/views/keep_disks/_content_layout.html.erb | 3 -
.../app/views/layouts/application.html.erb | 4 +-
apps/workbench/app/views/layouts/body.html.erb | 31 +-
.../notifications/_ssh_key_notification.html.erb | 22 +-
.../pipeline_instances/_running_component.html.erb | 4 +-
.../views/pipeline_instances/_show_inputs.html.erb | 5 +-
.../views/pipeline_instances/_show_recent.html.erb | 2 +-
.../app/views/pipeline_instances/index.html.erb | 3 +-
.../views/pipeline_templates/_show_recent.html.erb | 2 +-
.../app/views/pipeline_templates/show.html.erb | 2 +-
.../views/projects/_compute_node_status.html.erb | 2 +-
.../views/projects/_show_contents_rows.html.erb | 2 +-
.../app/views/projects/_show_dashboard.html.erb | 14 +-
.../app/views/projects/_show_tab_contents.html.erb | 23 +-
apps/workbench/app/views/projects/show.html.erb | 52 ++-
.../app/views/user_agreements/index.html.erb | 2 +-
.../app/views/users/_add_ssh_key_popup.html.erb | 6 +-
.../app/views/users/_manage_ssh_keys.html.erb | 8 +-
.../workbench/app/views/users/_show_admin.html.erb | 2 +-
apps/workbench/app/views/users/_tables.html.erb | 6 +-
apps/workbench/app/views/users/setup_popup.js.erb | 6 +-
apps/workbench/app/views/users/welcome.html.erb | 27 +-
apps/workbench/config/application.default.yml | 11 +-
apps/workbench/config/database.yml | 7 +
.../config/initializers/rack_mini_profile.rb | 5 +
apps/workbench/config/routes.rb | 5 +-
.../actions_controller_test.rb | 0
.../api_client_authorizations_controller_test.rb | 0
.../application_controller_test.rb | 4 +
.../authorized_keys_controller_test.rb | 0
.../controllers/collections_controller_test.rb | 247 +++++++++++
.../groups_controller_test.rb | 0
.../humans_controller_test.rb | 0
.../job_tasks_controller_test.rb | 0
.../jobs_controller_test.rb | 0
.../keep_disks_controller_test.rb | 0
.../links_controller_test.rb | 0
.../logs_controller_test.rb | 0
.../nodes_controller_test.rb | 0
.../pipeline_instances_controller_test.rb | 171 ++++++--
.../pipeline_templates_controller_test.rb | 0
.../projects_controller_test.rb | 27 +-
.../controllers/repositories_controller_test.rb | 48 +++
.../test/controllers/search_controller_test.rb | 41 +-
.../sessions_controller_test.rb | 0
.../specimens_controller_test.rb | 0
.../traits_controller_test.rb | 0
.../user_agreements_controller_test.rb | 0
.../users_controller_test.rb | 2 +-
.../virtual_machines_controller_test.rb | 0
apps/workbench/test/diagnostics/pipeline_test.rb | 17 +-
apps/workbench/test/diagnostics_test_helper.rb | 3 +
apps/workbench/test/functional/.gitkeep | 0
.../test/functional/collections_controller_test.rb | 229 ----------
.../pipeline_instances_controller_test.rb | 157 -------
.../functional/repositories_controller_test.rb | 4 -
.../test/helpers/pipeline_instances_helper_test.rb | 38 ++
apps/workbench/test/helpers/share_object_helper.rb | 78 ++++
.../test/integration/application_layout_test.rb | 11 +-
.../test/integration/collection_upload_test.rb | 96 +++++
.../workbench/test/integration/collections_test.rb | 65 +--
apps/workbench/test/integration/errors_test.rb | 6 +-
.../integration/filterable_infinite_scroll_test.rb | 4 +-
apps/workbench/test/integration/jobs_test.rb | 6 +-
apps/workbench/test/integration/logins_test.rb | 2 +-
.../test/integration/pipeline_instances_test.rb | 178 +++++---
.../test/integration/pipeline_templates_test.rb | 4 +-
apps/workbench/test/integration/projects_test.rb | 286 ++++++++-----
.../test/integration/report_issue_test.rb | 27 +-
.../test/integration/repositories_test.rb | 43 ++
apps/workbench/test/integration/search_box_test.rb | 6 +-
apps/workbench/test/integration/smoke_test.rb | 2 +-
.../test/integration/user_agreements_test.rb | 4 +-
.../test/integration/user_manage_account_test.rb | 52 ++-
.../test/integration/user_profile_test.rb | 7 +-
apps/workbench/test/integration/users_test.rb | 73 ++--
.../test/integration/virtual_machines_test.rb | 2 +-
apps/workbench/test/integration/websockets_test.rb | 48 ++-
apps/workbench/test/integration_helper.rb | 72 +++-
apps/workbench/test/performance/browsing_test.rb | 45 +-
apps/workbench/test/performance_test_helper.rb | 32 ++
apps/workbench/test/test_helper.rb | 101 ++++-
.../test/unit/api_client_authorization_test.rb | 7 -
apps/workbench/test/unit/authorized_key_test.rb | 7 -
apps/workbench/test/unit/human_test.rb | 7 -
apps/workbench/test/unit/job_task_test.rb | 7 -
apps/workbench/test/unit/keep_disk_test.rb | 4 -
apps/workbench/test/unit/log_test.rb | 7 -
apps/workbench/test/unit/node_test.rb | 7 -
apps/workbench/test/unit/pipeline_template_test.rb | 7 -
apps/workbench/test/unit/repository_test.rb | 7 -
apps/workbench/test/unit/specimen_test.rb | 7 -
apps/workbench/test/unit/trait_test.rb | 7 -
apps/workbench/test/unit/user_agreement_test.rb | 7 -
apps/workbench/test/unit/virtual_machine_test.rb | 7 -
.../vendor/assets/javascripts/jquery.number.min.js | 2 +
crunch_scripts/run-command | 6 +-
doc/_config.yml | 2 +-
doc/_includes/_0_filter_py.liquid | 29 +-
doc/_includes/_concurrent_hash_script_py.liquid | 33 +-
doc/_includes/_run_md5sum_py.liquid | 7 +-
doc/_includes/_ssh_addkey.liquid | 2 +-
doc/_includes/_tutorial_expectations.liquid | 4 +-
doc/_includes/_tutorial_hash_script_py.liquid | 44 +-
doc/api/schema/Job.html.textile.liquid | 2 +-
doc/css/bootstrap.css | 6 +-
doc/images/download-shared-collection.png | Bin 0 -> 39610 bytes
doc/images/files-uploaded.png | Bin 0 -> 53926 bytes
doc/images/shared-collection.png | Bin 0 -> 31833 bytes
doc/images/upload-tab-in-new-collection.png | Bin 0 -> 77537 bytes
doc/images/upload-using-workbench.png | Bin 0 -> 49690 bytes
doc/images/workbench-move-selected.png | Bin 11267 -> 47833 bytes
.../create-standard-objects.html.textile.liquid | 22 +-
doc/install/install-api-server.html.textile.liquid | 24 +-
doc/install/install-keepproxy.html.textile.liquid | 9 +-
doc/install/install-keepstore.html.textile.liquid | 9 +-
.../install-shell-server.html.textile.liquid | 2 +-
doc/install/install-sso.html.textile.liquid | 58 ++-
doc/sdk/cli/index.html.textile.liquid | 6 +-
doc/sdk/cli/install.html.textile.liquid | 4 +-
doc/sdk/cli/reference.html.textile.liquid | 80 ++++
doc/sdk/cli/subcommands.html.textile.liquid | 152 ++++++-
doc/sdk/python/sdk-python.html.textile.liquid | 21 +-
.../check-environment.html.textile.liquid | 2 +-
doc/user/reference/sdk-cli.html.textile.liquid | 46 --
doc/user/topics/arv-run.html.textile.liquid | 6 +-
doc/user/topics/run-command.html.textile.liquid | 3 +-
.../tutorial-firstscript.html.textile.liquid | 17 +-
.../tutorial-keep-get.html.textile.liquid | 36 +-
.../tutorials/tutorial-keep.html.textile.liquid | 81 ++--
...tutorial-pipeline-workbench.html.textile.liquid | 2 +-
docker/api/Dockerfile | 3 +-
docker/api/arvados-clients.yml.in | 1 +
docker/api/setup.sh.in | 9 -
docker/api/ssh.sh | 10 -
docker/api/supervisor.conf | 5 +-
docker/api/update-gitolite.rb | 6 +
docker/arvdock | 23 +-
docker/base/Dockerfile | 8 +-
docker/build_tools/Makefile | 5 +-
docker/build_tools/build.rb | 17 -
docker/build_tools/config.rb | 9 -
docker/compute/Dockerfile | 1 -
docker/compute/ssh.sh | 10 -
docker/compute/supervisor.conf | 5 -
docker/config.yml.example | 6 -
docker/doc/apache2_foreground.sh | 5 -
docker/java-bwa-samtools/Dockerfile | 4 +-
docker/jobs/Dockerfile | 3 +-
docker/passenger/Dockerfile | 2 +-
docker/shell/Dockerfile | 2 +-
docker/shell/setup.sh.in | 2 -
docker/slurm/supervisor.conf | 7 -
docker/sso/apache2_foreground.sh | 5 -
docker/workbench/apache2_foreground.sh | 7 +-
sdk/cli/.gitignore | 1 +
sdk/cli/Gemfile.lock | 72 ----
sdk/cli/bin/arv | 318 +++++++-------
sdk/cli/bin/crunch-job | 396 +++++++++++------
sdk/cli/test/test_arv-collection-create.rb | 5 +-
sdk/cli/test/test_arv-get.rb | 50 ++-
sdk/cli/test/test_arv-put.rb | 41 +-
sdk/cli/test/test_arv-run-pipeline-instance.rb | 2 +
sdk/cli/test/test_arv-tag.rb | 6 +
sdk/go/arvadosclient/arvadosclient.go | 53 ++-
sdk/go/arvadosclient/arvadosclient_test.go | 28 ++
sdk/go/keepclient/keepclient.go | 22 +-
sdk/go/keepclient/keepclient_test.go | 91 ++--
sdk/go/keepclient/support.go | 119 ++++--
sdk/python/.gitignore | 6 +-
sdk/python/arvados/__init__.py | 1 +
sdk/python/arvados/collection.py | 36 +-
sdk/python/arvados/commands/ls.py | 52 +++
sdk/python/arvados/errors.py | 47 +-
sdk/python/arvados/keep.py | 40 +-
sdk/python/bin/arv-get | 2 +-
sdk/python/bin/arv-ls | 23 +-
sdk/python/setup.py | 32 +-
sdk/python/tests/test_arv_ls.py | 80 ++++
sdk/python/tests/test_collections.py | 14 +
sdk/python/tests/test_errors.py | 68 +++
sdk/python/tests/test_keep_client.py | 65 +++
sdk/python/tests/test_sdk.py | 43 ++
sdk/ruby/lib/arvados/keep.rb | 73 ++--
services/api/Gemfile | 4 +-
services/api/Gemfile.lock | 18 +-
.../api_client_authorizations.js.coffee | 3 -
.../app/assets/javascripts/api_clients.js.coffee | 3 -
services/api/app/assets/javascripts/application.js | 9 -
.../assets/javascripts/authorized_keys.js.coffee | 3 -
.../app/assets/javascripts/collections.js.coffee | 3 -
.../assets/javascripts/commit_ancestors.js.coffee | 3 -
.../api/app/assets/javascripts/commits.js.coffee | 3 -
.../api/app/assets/javascripts/groups.js.coffee | 3 -
.../api/app/assets/javascripts/humans.js.coffee | 3 -
.../api/app/assets/javascripts/job_tasks.js.coffee | 3 -
services/api/app/assets/javascripts/jobs.js.coffee | 3 -
.../app/assets/javascripts/keep_disks.js.coffee | 3 -
.../api/app/assets/javascripts/links.js.coffee | 3 -
services/api/app/assets/javascripts/logs.js.coffee | 3 -
services/api/app/assets/javascripts/nodes.js | 17 -
.../api/app/assets/javascripts/nodes.js.coffee | 3 -
.../javascripts/pipeline_instances.js.coffee | 3 -
.../javascripts/pipeline_templates.js.coffee | 3 -
.../app/assets/javascripts/repositories.js.coffee | 3 -
.../api/app/assets/javascripts/specimens.js.coffee | 3 -
.../api/app/assets/javascripts/traits.js.coffee | 3 -
.../assets/javascripts/virtual_machines.js.coffee | 3 -
.../api/app/controllers/application_controller.rb | 43 ++
.../arvados/v1/collections_controller.rb | 2 +-
.../arvados/v1/keep_disks_controller.rb | 14 +-
.../app/controllers/arvados/v1/nodes_controller.rb | 15 +-
.../controllers/arvados/v1/schema_controller.rb | 8 +-
.../api/app/controllers/database_controller.rb | 73 ++++
services/api/app/controllers/static_controller.rb | 6 +-
.../app/controllers/user_sessions_controller.rb | 11 +-
services/api/app/models/arvados_model.rb | 4 +
services/api/app/models/collection.rb | 31 ++
services/api/app/models/database_seeds.rb | 11 +
services/api/app/models/job.rb | 41 +-
services/api/app/models/node.rb | 18 +-
services/api/app/models/user.rb | 36 +-
services/api/config/application.default.yml | 11 +-
services/api/config/routes.rb | 14 +
.../20140422011506_pipeline_instance_state.rb | 9 +-
.../db/migrate/20141208164553_owner_uuid_index.rb | 26 ++
.../20141208174553_descriptions_are_strings.rb | 21 +
.../20141208174653_collection_file_names.rb | 20 +
.../api/db/migrate/20141208185217_search_index.rb | 32 ++
services/api/db/seeds.rb | 9 +-
services/api/db/structure.sql | 296 ++++++++++++-
services/api/lib/current_api_client.rb | 22 +
services/api/lib/eventbus.rb | 27 +-
services/api/lib/josh_id.rb | 14 +-
services/api/lib/simulate_job_log.rb | 49 +++
services/api/lib/tasks/replay_job_log.rake | 7 +
services/api/script/crunch-dispatch.rb | 250 ++++++-----
services/api/script/crunch_failure_report.py | 219 ++++++++++
.../test/fixtures/api_client_authorizations.yml | 6 +
services/api/test/fixtures/collections.yml | 30 ++
services/api/test/fixtures/groups.yml | 16 +-
services/api/test/fixtures/pipeline_templates.yml | 1 -
services/api/test/fixtures/users.yml | 21 +-
.../test/functional/application_controller_test.rb | 44 ++
.../arvados/v1/collections_controller_test.rb | 37 +-
.../arvados/v1/job_reuse_controller_test.rb | 43 +-
.../arvados/v1/keep_disks_controller_test.rb | 31 +-
.../functional/arvados/v1/links_controller_test.rb | 17 +-
.../functional/arvados/v1/logs_controller_test.rb | 4 +-
.../functional/arvados/v1/nodes_controller_test.rb | 8 +
.../test/functional/database_controller_test.rb | 47 ++
.../api/test/integration/collections_api_test.rb | 70 +++
services/api/test/integration/cross_origin_test.rb | 76 ++++
.../api/test/integration/database_reset_test.rb | 75 ++++
services/api/test/integration/errors_test.rb | 2 +-
services/api/test/job_logs/crunchstatshort.log | 1 +
services/api/test/test_helper.rb | 4 +
services/api/test/unit/arvados_model_test.rb | 59 +++
services/api/test/unit/collection_test.rb | 43 ++
services/api/test/unit/job_test.rb | 54 ++-
services/fuse/arvados_fuse/__init__.py | 103 ++---
services/fuse/bin/arv-mount | 2 +
services/fuse/setup.py | 35 +-
services/fuse/tests/test_mount.py | 178 ++++----
services/keepproxy/keepproxy.go | 88 +++-
services/keepproxy/keepproxy_test.go | 89 +++-
services/keepstore/handler_test.go | 18 +-
services/keepstore/handlers.go | 2 +-
services/keepstore/logging_router.go | 14 +-
services/nodemanager/.gitignore | 6 +-
services/nodemanager/arvnodeman/clientactor.py | 13 +-
.../arvnodeman/computenode/dispatch/__init__.py | 63 ++-
.../arvnodeman/computenode/dispatch/slurm.py | 4 +-
.../arvnodeman/computenode/driver/__init__.py | 20 +
.../arvnodeman/computenode/driver/ec2.py | 12 +-
services/nodemanager/arvnodeman/config.py | 4 +-
services/nodemanager/arvnodeman/daemon.py | 61 ++-
services/nodemanager/arvnodeman/jobqueue.py | 13 +-
services/nodemanager/arvnodeman/launcher.py | 22 +-
services/nodemanager/arvnodeman/nodelist.py | 10 +-
services/nodemanager/doc/ec2.example.cfg | 6 +
services/nodemanager/doc/gce.example.cfg | 8 +-
services/nodemanager/setup.py | 34 +-
.../nodemanager/tests/test_computenode_dispatch.py | 36 +-
.../tests/test_computenode_dispatch_slurm.py | 20 +-
.../tests/test_computenode_driver_ec2.py | 52 ++-
services/nodemanager/tests/test_daemon.py | 124 ++++--
services/nodemanager/tests/test_jobqueue.py | 22 +-
services/nodemanager/tests/testutil.py | 18 +-
350 files changed, 7289 insertions(+), 3529 deletions(-)
create mode 100644 apps/workbench/app/assets/javascripts/angular_shim.js
create mode 100644 apps/workbench/app/assets/javascripts/arvados_client.js
create mode 100644 apps/workbench/app/assets/javascripts/upload_to_collection.js
delete mode 100644 apps/workbench/app/assets/stylesheets/selection.css
delete mode 100644 apps/workbench/app/helpers/api_client_authorizations_helper.rb
delete mode 100644 apps/workbench/app/helpers/authorized_keys_helper.rb
delete mode 100644 apps/workbench/app/helpers/groups_helper.rb
delete mode 100644 apps/workbench/app/helpers/humans_helper.rb
delete mode 100644 apps/workbench/app/helpers/job_tasks_helper.rb
delete mode 100644 apps/workbench/app/helpers/keep_disks_helper.rb
delete mode 100644 apps/workbench/app/helpers/links_helper.rb
delete mode 100644 apps/workbench/app/helpers/logs_helper.rb
delete mode 100644 apps/workbench/app/helpers/nodes_helper.rb
delete mode 100644 apps/workbench/app/helpers/projects_helper.rb
delete mode 100644 apps/workbench/app/helpers/repositories_helper.rb
delete mode 100644 apps/workbench/app/helpers/sessions_helper.rb
delete mode 100644 apps/workbench/app/helpers/specimens_helper.rb
delete mode 100644 apps/workbench/app/helpers/traits_helper.rb
delete mode 100644 apps/workbench/app/helpers/user_agreements_helper.rb
delete mode 100644 apps/workbench/app/helpers/users_helper.rb
delete mode 100644 apps/workbench/app/helpers/vcf_pipeline_helper.rb
create mode 100644 apps/workbench/app/helpers/version_helper.rb
delete mode 100644 apps/workbench/app/helpers/virtual_machines_helper.rb
rename apps/workbench/app/views/{projects => application}/_show_sharing.html.erb (87%)
delete mode 100644 apps/workbench/app/views/authorized_keys/_show_help.html.erb
create mode 100644 apps/workbench/app/views/collections/_show_upload.html.erb
create mode 100644 apps/workbench/config/initializers/rack_mini_profile.rb
rename apps/workbench/test/{functional => controllers}/actions_controller_test.rb (100%)
rename apps/workbench/test/{functional => controllers}/api_client_authorizations_controller_test.rb (100%)
rename apps/workbench/test/{functional => controllers}/application_controller_test.rb (98%)
rename apps/workbench/test/{functional => controllers}/authorized_keys_controller_test.rb (100%)
rename apps/workbench/test/{functional => controllers}/groups_controller_test.rb (100%)
rename apps/workbench/test/{functional => controllers}/humans_controller_test.rb (100%)
rename apps/workbench/test/{functional => controllers}/job_tasks_controller_test.rb (100%)
rename apps/workbench/test/{functional => controllers}/jobs_controller_test.rb (100%)
rename apps/workbench/test/{functional => controllers}/keep_disks_controller_test.rb (100%)
rename apps/workbench/test/{functional => controllers}/links_controller_test.rb (100%)
rename apps/workbench/test/{functional => controllers}/logs_controller_test.rb (100%)
rename apps/workbench/test/{functional => controllers}/nodes_controller_test.rb (100%)
rename apps/workbench/test/{functional => controllers}/pipeline_templates_controller_test.rb (100%)
rename apps/workbench/test/{functional => controllers}/projects_controller_test.rb (89%)
create mode 100644 apps/workbench/test/controllers/repositories_controller_test.rb
rename apps/workbench/test/{functional => controllers}/sessions_controller_test.rb (100%)
rename apps/workbench/test/{functional => controllers}/specimens_controller_test.rb (100%)
rename apps/workbench/test/{functional => controllers}/traits_controller_test.rb (100%)
rename apps/workbench/test/{functional => controllers}/user_agreements_controller_test.rb (100%)
rename apps/workbench/test/{functional => controllers}/users_controller_test.rb (96%)
rename apps/workbench/test/{functional => controllers}/virtual_machines_controller_test.rb (100%)
delete mode 100644 apps/workbench/test/functional/.gitkeep
delete mode 100644 apps/workbench/test/functional/collections_controller_test.rb
delete mode 100644 apps/workbench/test/functional/pipeline_instances_controller_test.rb
delete mode 100644 apps/workbench/test/functional/repositories_controller_test.rb
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Those revisions listed above that are new to this repository have
not appeared on any other notification email; so we list those
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commit 80b809aa535067a3a87115d19f26feb9b3f9cb60
Merge: bff57ea 030e58e
Author: Tim Pierce <twp at curoverse.com>
Date: Tue Jan 20 16:23:07 2015 -0500
Merge branch 'master' into 4138-node-manager-google-cloud
commit bff57ea5cd61b02b829d831e3637151b1cf4b94c
Merge: 271294f 9013faf
Author: Tim Pierce <twp at curoverse.com>
Date: Tue Jan 6 12:25:13 2015 -0500
Merge branch 'master' into 4138-node-manager-google-cloud
commit 271294ffc7ef53389959921589d679cb2b4065ce
Author: Tim Pierce <twp at curoverse.com>
Date: Mon Nov 24 17:12:07 2014 -0500
4138: code review feedback
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