[ARVADOS] created: 95053e5fc874360be26b6cb87d43b6d5ce95dc0e

[git at public.curoverse.com]

        at  95053e5fc874360be26b6cb87d43b6d5ce95dc0e (commit)


commit 95053e5fc874360be26b6cb87d43b6d5ce95dc0e
Author: Nancy Ouyang <nancy.ouyang at gmail.com>
Date:   Tue Feb 17 17:19:37 2015 -0500

    5194: Quickfix, disambiguated getting started and user guide sections, added 'next steps' to getting started guide

diff --git a/doc/_config.yml b/doc/_config.yml
index 9f4d440..0a6c4ed 100644
--- a/doc/_config.yml
+++ b/doc/_config.yml
@@ -20,9 +20,11 @@ navbar:
       - start/getting_started/firstpipeline.html.textile.liquid
     - Common Use Cases:
       - start/getting_started/sharedata.html.textile.liquid
+    - Next Steps:
+      - start/getting_started/nextsteps.html.textile.liquid
 
   userguide:
-    - Getting Started:
+    - Welcome:
       - user/index.html.textile.liquid
       - user/getting_started/community.html.textile.liquid
     - Run a pipeline using Workbench:
diff --git a/doc/start/getting_started/nextsteps.html.textile.liquid b/doc/start/getting_started/nextsteps.html.textile.liquid
new file mode 100644
index 0000000..e4e7f2c
--- /dev/null
+++ b/doc/start/getting_started/nextsteps.html.textile.liquid
@@ -0,0 +1,7 @@
+---
+layout: default
+navsection: start 
+title: Check out the User Guide 
+...
+
+Now that you've finished the Getting Started guide, check out the "User Guide":{{site.baseurl}}/user/index.html. The User Guide goes into more depth than the Getting Started guide, covers how to develop your own pipelines in addition to using pre-existing pipelines, covers the Arvados commandline tools in addition to the Workbench graphical interface to Arvados, and can be referenced in any order.
diff --git a/doc/user/index.html.textile.liquid b/doc/user/index.html.textile.liquid
index 46a55ae..8dde789 100644
--- a/doc/user/index.html.textile.liquid
+++ b/doc/user/index.html.textile.liquid
@@ -4,15 +4,17 @@ navsection: userguide
 title: Welcome to Arvados!
 ...
 
-_If you are new to Arvados and want to get started quickly, go to "Accessing Arvados Workbench.":{{site.baseurl}}/user/getting_started/workbench.html_
+_This is the User Guide. If you are new to Arvados and want to get started quickly, go to "Getting Started":{{site.baseurl}}/start/index.html instead._
 
-This guide provides an introduction to using Arvados to solve big data bioinformatics problems, including:
+This guide provides a reference for using Arvados to solve big data bioinformatics problems, including:
 
 * Robust storage of very large files, such as whole genome sequences, using the "Arvados Keep":{{site.baseurl}}/user/tutorials/tutorial-keep.html content-addressable cluster file system.
 * Running compute-intensive genomic analysis pipelines, such as alignment and variant calls using the "Arvados Crunch":{{site.baseurl}}/user/tutorials/intro-crunch.html cluster compute engine.
 * Storing and querying metadata about genome sequence files, such as human subjects and their phenotypic traits using the "Arvados Metadata Database.":{{site.baseurl}}/user/topics/tutorial-trait-search.html
 * Accessing, organizing, and sharing data, pipelines and results using the "Arvados Workbench":{{site.baseurl}}/user/getting_started/workbench.html web application.
 
+This User Guide goes into more depth than the "Getting Started guide":{{site.baseurl}}/start/index.html, covers how to develop your own pipelines in addition to using pre-existing pipelines, covers the Arvados commandline tools in addition to the Workbench graphical interface to Arvados, and can be referenced in any order.
+
 The examples in this guide use the Arvados instance located at <a href="https://{{ site.arvados_workbench_host }}/" target="_blank">https://{{ site.arvados_workbench_host }}</a>.  If you are using a different Arvados instance replace @{{ site.arvados_workbench_host }}@ with your private instance in all of the examples in this guide.
 
 Curoverse maintains a public Arvados instance located at <a href="https://workbench.qr1hi.arvadosapi.com/" target="_blank">https://workbench.qr1hi.arvadosapi.com/</a>.  You must have an account in order to use this service.  If you would like to request an account, please send an email to "arvados at curoverse.com":mailto:arvados at curoverse.com.

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