[ARVADOS] updated: a11c56ef66604a9117e3db8c2fa2273c98f88b51
git at public.curoverse.com
git at public.curoverse.com
Thu Feb 5 16:33:52 EST 2015
Summary of changes:
.../app/controllers/application_controller.rb | 6 +-
.../app/controllers/collections_controller.rb | 20 ++-
apps/workbench/app/controllers/jobs_controller.rb | 9 +-
.../controllers/pipeline_instances_controller.rb | 5 +
.../controllers/pipeline_templates_controller.rb | 5 +
.../app/controllers/projects_controller.rb | 25 ++-
apps/workbench/app/helpers/application_helper.rb | 2 +-
apps/workbench/app/models/arvados_api_client.rb | 11 +-
apps/workbench/app/models/arvados_base.rb | 2 +-
apps/workbench/app/models/authorized_key.rb | 4 +
apps/workbench/app/models/collection.rb | 4 -
apps/workbench/app/models/job.rb | 4 -
apps/workbench/app/views/application/404.html.erb | 22 ++-
.../application/_create_new_object_button.html.erb | 7 +
.../views/application/_title_and_buttons.html.erb | 6 +-
.../workbench/app/views/application/index.html.erb | 19 +--
.../collections/_create_new_object_button.html.erb | 1 +
.../app/views/collections/_index_tbody.html.erb | 2 +-
.../app/views/collections/_show_files.html.erb | 171 ++++++++++-----------
.../views/jobs/_create_new_object_button.html.erb | 1 +
.../app/views/jobs/_show_job_buttons.html.erb | 2 +-
.../pipeline_instances/_running_component.html.erb | 2 +-
.../views/pipeline_instances/_show_inputs.html.erb | 15 +-
.../pipeline_instances/_show_tab_buttons.html.erb | 2 +
.../app/views/pipeline_templates/show.html.erb | 38 +++--
.../app/views/projects/_show_dashboard.html.erb | 10 +-
.../app/views/projects/_show_tab_contents.html.erb | 108 ++++++-------
apps/workbench/app/views/projects/show.html.erb | 2 +-
.../views/users/_create_new_object_button.html.erb | 6 +
apps/workbench/config/application.default.yml | 5 +
.../controllers/application_controller_test.rb | 37 +++++
.../controllers/collections_controller_test.rb | 23 ++-
.../test/controllers/projects_controller_test.rb | 14 ++
.../test/integration/anonymous_access_test.rb | 161 +++++++++++++++++++
apps/workbench/test/integration/errors_test.rb | 1 -
.../test/integration/user_manage_account_test.rb | 25 ++-
apps/workbench/test/integration/websockets_test.rb | 3 +-
crunch_scripts/crunchutil/subst.py | 7 +-
doc/_config.yml | 1 +
doc/_includes/_arv_run_redirection.liquid | 19 +++
doc/sdk/cli/index.html.textile.liquid | 44 +++++-
doc/sdk/cli/reference.html.textile.liquid | 13 +-
doc/user/topics/arv-run.html.textile.liquid | 20 +--
.../crunch-tools-overview.html.textile.liquid | 63 ++++++++
doc/user/topics/run-command.html.textile.liquid | 10 ++
sdk/cli/bin/crunch-job | 16 +-
sdk/python/arvados/api.py | 16 +-
sdk/python/arvados/commands/arv_copy.py | 3 +-
sdk/python/arvados/commands/ws.py | 4 +-
sdk/python/arvados/events.py | 4 +-
sdk/python/tests/test_api.py | 10 +-
sdk/python/tests/test_arv_put.py | 4 +-
sdk/python/tests/test_pipeline_template.py | 10 +-
sdk/python/tests/test_websockets.py | 54 +++----
services/api/Gemfile | 2 +-
services/api/Gemfile.lock | 8 +-
.../app/controllers/arvados/v1/links_controller.rb | 2 +-
.../app/controllers/arvados/v1/users_controller.rb | 9 +-
services/api/app/models/arvados_model.rb | 1 +
services/api/app/models/user.rb | 2 +-
...203180223_set_group_class_on_anonymous_group.rb | 14 ++
services/api/db/structure.sql | 4 +-
services/api/lib/current_api_client.rb | 132 ++++++++--------
services/api/test/fixtures/jobs.yml | 24 +++
services/api/test/fixtures/links.yml | 14 ++
services/api/test/fixtures/pipeline_instances.yml | 16 ++
services/api/test/fixtures/pipeline_templates.yml | 20 +++
services/fuse/tests/test_mount.py | 4 +-
68 files changed, 905 insertions(+), 425 deletions(-)
create mode 100644 apps/workbench/app/views/application/_create_new_object_button.html.erb
create mode 100644 apps/workbench/app/views/collections/_create_new_object_button.html.erb
create mode 100644 apps/workbench/app/views/jobs/_create_new_object_button.html.erb
create mode 100644 apps/workbench/app/views/users/_create_new_object_button.html.erb
create mode 100644 apps/workbench/test/integration/anonymous_access_test.rb
create mode 100644 doc/_includes/_arv_run_redirection.liquid
create mode 100644 doc/user/topics/crunch-tools-overview.html.textile.liquid
create mode 100644 services/api/db/migrate/20150203180223_set_group_class_on_anonymous_group.rb
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Those revisions listed above that are new to this repository have
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commit a11c56ef66604a9117e3db8c2fa2273c98f88b51
Merge: 5b70a11 1e2e0e4
Author: Radhika Chippada <radhika at curoverse.com>
Date: Thu Feb 5 16:33:39 2015 -0500
Merge branch 'master' into 4523-full-text-search
Conflicts:
services/api/db/structure.sql
diff --cc services/api/db/structure.sql
index b7d2ea5,5d9e3e5..3622608
--- a/services/api/db/structure.sql
+++ b/services/api/db/structure.sql
@@@ -2353,6 -2318,4 +2353,6 @@@ INSERT INTO schema_migrations (version
INSERT INTO schema_migrations (version) VALUES ('20150122175935');
-INSERT INTO schema_migrations (version) VALUES ('20150203180223');
+INSERT INTO schema_migrations (version) VALUES ('20150123142953');
+
- INSERT INTO schema_migrations (version) VALUES ('20150203180223');
++INSERT INTO schema_migrations (version) VALUES ('20150203180223');
commit 5b70a11a08dc26b43b3ec4aef178bafe3a801b86
Author: Radhika Chippada <radhika at curoverse.com>
Date: Thu Feb 5 16:29:56 2015 -0500
4523: preparing to merge master
diff --git a/services/api/db/structure.sql b/services/api/db/structure.sql
index 5de21d8..b7d2ea5 100644
--- a/services/api/db/structure.sql
+++ b/services/api/db/structure.sql
@@ -2353,4 +2353,6 @@ INSERT INTO schema_migrations (version) VALUES ('20141208185217');
INSERT INTO schema_migrations (version) VALUES ('20150122175935');
-INSERT INTO schema_migrations (version) VALUES ('20150123142953');
\ No newline at end of file
+INSERT INTO schema_migrations (version) VALUES ('20150123142953');
+
+INSERT INTO schema_migrations (version) VALUES ('20150203180223');
\ No newline at end of file
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